Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.301522	Taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	19		226182
Gene Ontology	nucleus | regulation of transcription | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor TFIID complex | transcription regulator activity
Human Homolog	TAF5[TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 83 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAATACTCAA (3) 21.2 0.0212 P8 Cb GC TAAAAGAAAA (6) 14.7 0.0147 P8 Cb GC AAAATGAAGC 1.6 0.0016 P8 Cb GC ACGTCAATCT (2) 1.6 0.0016 P8 Cb GC GGACTTAACA (2) 1.6 0.0016 P8 Cb GC GTGGGCAGCC (5) 1.6 0.0016 Cb medulloblastoma TAAAAGAAAA (6) 64.7 0.0647 Cb medulloblastoma TAATACTCAA (3) 48.6 0.0486 Cb medulloblastoma TAATATTCAA (4) 4.6 0.0046 P8 GC+1d culture TAATACTCAA (3) 52.5 0.0525 P8 GC+1d culture TAAAAGAAAA (6) 24 0.024 P8 GC+1d culture TAATATTCAA (4) 3.4 0.0034 P8 GC+SHH+1d culture TAATACTCAA (3) 57.4 0.0574 P8 GC+SHH+1d culture TAAAAGAAAA (6) 34 0.034 P8 GC+SHH+1d culture TAATATTCAA (4) 3.5 0.0035 P8 GC+SHH+1d culture GGACTTAACA (2) 2.3 0.0023 P8 GC+SHH+1d culture AAAATGAAGC 1.2 0.0012 P8 GC+SHH+1d culture GTGGGCAGCC (5) 1.2 0.0012 3T3 fibroblasts GTGGGCAGCC (5) 3.5 0.0035 3T3 fibroblasts TAATACTCAA (3) 3.5 0.0035 E15 cortex TAAAAGAAAA (6) 9.9 0.0099 P1 cortex TAATACTCAA (3) 18.2 0.0182 P1 cortex TAAAAGAAAA (6) 13.6 0.0136 Hypothalamus TAATACTCAA (3) 199.2 0.1992 Hypothalamus TAAAAGAAAA (6) 12.7 0.0127 Hypothalamus ACGTCAATCT (2) 10.9 0.0109 Hypothalamus GGACTTAACA (2) 10.9 0.0109 Hypothalamus CTAAAATCAC (3) 3.6 0.0036 Hypothalamus AAAATGAAGC 1.8 0.0018 Hypothalamus GGGAGTTGTG (4) 1.8 0.0018 Hypothalamus TAATATTCAA (4) 1.8 0.0018 E12.5 retina TAATACTCAA (3) 43.2 0.0432 E12.5 retina TAAAAGAAAA (6) 15 0.015 E12.5 retina AAAATGAAGC 1.9 0.0019 E12.5 retina GGGAGTTGTG (4) 1.9 0.0019 E12.5 retina TAATATTCAA (4) 1.9 0.0019 E14.5 retina TAATACTCAA (3) 56.5 0.0565 E14.5 retina TAAAAGAAAA (6) 21.9 0.0219 E14.5 retina AAAATGAAGC 1.8 0.0018 E14.5 retina ACGTCAATCT (2) 1.8 0.0018 E14.5 retina GCTACATATG (3) 1.8 0.0018 E16.5 retina TAATACTCAA (3) 52.5 0.0525 E16.5 retina TAAAAGAAAA (6) 21.7 0.0217 E16.5 retina ACGTCAATCT (2) 1.8 0.0018 E16.5 retina GGACTTAACA (2) 1.8 0.0018 E18.5 retina TAATACTCAA (3) 89.1 0.0891 E18.5 retina TAAAAGAAAA (6) 20 0.02 E18.5 retina CTAAAATCAC (3) 1.8 0.0018 P0.5 retina TAATACTCAA (3) 23.6 0.0236 P0.5 retina TAAAAGAAAA (6) 7.9 0.0079 P0.5 retina GTGGGCAGCC (5) 2 0.002 P0.5 retina TAATATTCAA (4) 2 0.002 P2.5 retina TAATACTCAA (3) 38.7 0.0387 P2.5 retina TAAAAGAAAA (6) 26.4 0.0264 P2.5 retina TAATATTCAA (4) 3.5 0.0035 P2.5 retina AAAATGAAGC 1.8 0.0018 P2.5 retina ACGTCAATCT (2) 1.8 0.0018 P2.5 retina GCTACATATG (3) 1.8 0.0018 P4.5 retina TAATACTCAA (3) 67.4 0.0674 P4.5 retina TAAAAGAAAA (6) 47.6 0.0476 P4.5 retina AAAATGAAGC 4 0.004 P4.5 retina GGACTTAACA (2) 2 0.002 P4.5 retina TAATATTCAA (4) 2 0.002 P6.5 retina TAATACTCAA (3) 50 0.05 P6.5 retina TAAAAGAAAA (6) 28.3 0.0283 P6.5 retina GGACTTAACA (2) 1.7 0.0017 P6.5 retina TAATATTCAA (4) 1.7 0.0017 P10.5 crx- retina TAATACTCAA (3) 22.3 0.0223 P10.5 crx- retina TAAAAGAAAA (6) 20.4 0.0204 P10.5 crx- retina TAATATTCAA (4) 3.7 0.0037 P10.5 crx- retina CTAAAATCAC (3) 1.9 0.0019 P10.5 crx- retina GGACTTAACA (2) 1.9 0.0019 P10.5 crx+ retina TAATACTCAA (3) 36.5 0.0365 P10.5 crx+ retina TAAAAGAAAA (6) 13.5 0.0135 P10.5 crx+ retina GGACTTAACA (2) 1.9 0.0019 Adult retinal TAATACTCAA (3) 22.2 0.0222 Adult retinal TAAAAGAAAA (6) 3.7 0.0037 Adult retinal GCTACATATG (3) 1.9 0.0019 ONL TAAAAGAAAA (6) 21.1 0.0211 ONL TAATACTCAA (3) 19.2 0.0192 ONL GGGAGTTGTG (4) 3.8 0.0038 ONL AAAATGAAGC 1.9 0.0019 ONL CTAAAATCAC (3) 1.9 0.0019