Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.302938	Ddx3y	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	Y	Y 2.07 cM	26900
Mm.302938	D1Pas1-rs1	DNA segment, Chr 1, Pasteur Institute 1, related sequence 1	1		13129
Gene Ontology	ATP binding | ATP dependent helicase activity | helicase activity | nucleic acid binding | RNA binding
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTTGAACTGT (3) 6.5 0.0065 P8 Cb GC TGCAATAAAA (7) 4.9 0.0049 P8 Cb GC GAACTTTAAG (6) 3.3 0.0033 P8 Cb GC TTTTAAATTT (9) 3.3 0.0033 P8 Cb GC AAAGTTTAAA (4) 1.6 0.0016 P8 Cb GC CTAGTGTTGG (3) 1.6 0.0016 Cb medulloblastoma TGCAATAAAA (7) 32.4 0.0324 Cb medulloblastoma CTTGAACTGT (3) 6.9 0.0069 Cb medulloblastoma GAACTTTAAG (6) 4.6 0.0046 Cb medulloblastoma AAAGTTTAAA (4) 2.3 0.0023 Cb medulloblastoma CTAGTGTTGG (3) 2.3 0.0023 P8 GC+1d culture TGCAATAAAA (7) 10.3 0.0103 P8 GC+1d culture GAACTTTAAG (6) 4.6 0.0046 P8 GC+1d culture TTTTAAATTT (9) 2.3 0.0023 P8 GC+1d culture GACCATAGAA (3) 1.1 0.0011 P8 GC+SHH+1d culture TGCAATAAAA (7) 12.9 0.0129 P8 GC+SHH+1d culture AAAGTTTAAA (4) 2.3 0.0023 P8 GC+SHH+1d culture CTTGAACTGT (3) 2.3 0.0023 P8 GC+SHH+1d culture GAACTTTAAG (6) 1.2 0.0012 P8 GC+SHH+1d culture GACCATAGAA (3) 1.2 0.0012 3T3 fibroblasts TGCAATAAAA (7) 3.5 0.0035 E15 cortex TGCAATAAAA (7) 4.9 0.0049 E15 cortex TTTTAAATTT (9) 4.9 0.0049 P1 cortex TGCAATAAAA (7) 9.1 0.0091 P1 cortex GAACTTTAAG (6) 4.5 0.0045 Hypothalamus TGCAATAAAA (7) 5.4 0.0054 Hypothalamus GAACTTTAAG (6) 3.6 0.0036 Hypothalamus CTTGAACTGT (3) 1.8 0.0018 E12.5 retina TGCAATAAAA (7) 7.5 0.0075 E12.5 retina TTTTAAATTT (9) 3.8 0.0038 E14.5 retina TGCAATAAAA (7) 7.3 0.0073 E14.5 retina GAACTTTAAG (6) 5.5 0.0055 E14.5 retina TTTTAAATTT (9) 5.5 0.0055 E14.5 retina ATACTTGCAG (2) 1.8 0.0018 E14.5 retina CTTGAACTGT (3) 1.8 0.0018 E16.5 retina CTTGAACTGT (3) 5.4 0.0054 E16.5 retina TGCAATAAAA (7) 5.4 0.0054 E16.5 retina ATACTTGCAG (2) 1.8 0.0018 E18.5 retina TGCAATAAAA (7) 23.6 0.0236 E18.5 retina CTTGAACTGT (3) 3.6 0.0036 E18.5 retina GAACTTTAAG (6) 1.8 0.0018 P0.5 retina TGCAATAAAA (7) 17.7 0.0177 P0.5 retina CTAGTGTTGG (3) 3.9 0.0039 P0.5 retina CTTGAACTGT (3) 2 0.002 P0.5 retina GAACTTTAAG (6) 2 0.002 P0.5 retina GACCATAGAA (3) 2 0.002 P2.5 retina TGCAATAAAA (7) 14.1 0.0141 P2.5 retina GAACTTTAAG (6) 3.5 0.0035 P2.5 retina ATACTTGCAG (2) 1.8 0.0018 P2.5 retina TTTTAAATTT (9) 1.8 0.0018 P4.5 retina TGCAATAAAA (7) 15.9 0.0159 P4.5 retina GAACTTTAAG (6) 7.9 0.0079 P4.5 retina CTTGAACTGT (3) 4 0.004 P4.5 retina GACCATAGAA (3) 2 0.002 P6.5 retina TGCAATAAAA (7) 18.3 0.0183 P6.5 retina ATACTTGCAG (2) 3.3 0.0033 P6.5 retina CTAGTGTTGG (3) 1.7 0.0017 P10.5 crx- retina TGCAATAAAA (7) 11.1 0.0111 P10.5 crx- retina GAACTTTAAG (6) 7.4 0.0074 P10.5 crx- retina ATACTTGCAG (2) 3.7 0.0037 P10.5 crx- retina AAAGTTTAAA (4) 1.9 0.0019 P10.5 crx- retina TTTTAAATTT (9) 1.9 0.0019 P10.5 crx+ retina TGCAATAAAA (7) 19.2 0.0192 P10.5 crx+ retina ATACTTGCAG (2) 9.6 0.0096 P10.5 crx+ retina GAACTTTAAG (6) 3.8 0.0038 P10.5 crx+ retina CTTGAACTGT (3) 1.9 0.0019 Adult retinal TGCAATAAAA (7) 7.4 0.0074 Adult retinal AAAGTTTAAA (4) 1.9 0.0019 Adult retinal CTTGAACTGT (3) 1.9 0.0019 ONL TGCAATAAAA (7) 7.7 0.0077 ONL ATACTTGCAG (2) 3.8 0.0038 ONL AAAGTTTAAA (4) 1.9 0.0019 ONL CTAGTGTTGG (3) 1.9 0.0019 ONL GAACTTTAAG (6) 1.9 0.0019 ONL TTTTAAATTT (9) 1.9 0.0019