Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30929	9530001N24Rik	RIKEN cDNA 9530001N24 gene	4		77436
Mm.30929	Prdx1	peroxiredoxin 1	4	4 47.0 cM	18477
Gene Ontology	antioxidant activity | oxidoreductase activity | peroxidase activity | response to oxidative stress
Human Homolog	PRDX1[peroxiredoxin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 144 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTAAAACA (3) 27.7 0.0277 P8 Cb GC ATGTGGTGTG (2) 24.5 0.0245 P8 Cb GC AACATTCCCT (4) 4.9 0.0049 P8 Cb GC GTTGGAACCT (8) 4.9 0.0049 P8 Cb GC CCTTTATTCC (18) 3.3 0.0033 P8 Cb GC TGTACCATTA (3) 3.3 0.0033 P8 Cb GC GAGGTGGTGG (8) 1.6 0.0016 P8 Cb GC GTGGAAGCTG (11) 1.6 0.0016 P8 Cb GC TCTTTAGGTT (2) 1.6 0.0016 P8 Cb GC TGTTTAAGCA (2) 1.6 0.0016 P8 Cb GC TTTGTCAGTG (5) 1.6 0.0016 Cb medulloblastoma GATTAAAACA (3) 37 0.037 Cb medulloblastoma GGGGAGGTTG (2) 9.2 0.0092 Cb medulloblastoma ATGTGGTGTG (2) 4.6 0.0046 Cb medulloblastoma TGTACCATTA (3) 4.6 0.0046 Cb medulloblastoma TTTTTAAGCA (4) 4.6 0.0046 Cb medulloblastoma GATTACCATA (2) 2.3 0.0023 P8 GC+1d culture ATGTGGTGTG (2) 24 0.024 P8 GC+1d culture GATTAAAACA (3) 10.3 0.0103 P8 GC+1d culture CCTTTATTCC (18) 6.8 0.0068 P8 GC+1d culture GTTGGAACCT (8) 3.4 0.0034 P8 GC+1d culture GATGTGGGTG (13) 1.1 0.0011 P8 GC+SHH+1d culture ATGTGGTGTG (2) 31.6 0.0316 P8 GC+SHH+1d culture GATTAAAACA (3) 14.1 0.0141 P8 GC+SHH+1d culture GTTGGAACCT (8) 3.5 0.0035 P8 GC+SHH+1d culture GTGAATGTTT (4) 2.3 0.0023 P8 GC+SHH+1d culture CCTTTATTCC (18) 1.2 0.0012 P8 GC+SHH+1d culture TCCCTGAAAA (3) 1.2 0.0012 P8 GC+SHH+1d culture TGTACCATTA (3) 1.2 0.0012 3T3 fibroblasts ATGTGGTGTG (2) 35 0.035 3T3 fibroblasts GAGGTGGTGG (8) 3.5 0.0035 3T3 fibroblasts GATGTGGGTG (13) 3.5 0.0035 3T3 fibroblasts GTTGGAACCT (8) 3.5 0.0035 E15 cortex GGGGAGGTTG (2) 9.9 0.0099 E15 cortex GAGGTGGTGG (8) 4.9 0.0049 P1 cortex CCTTTATTCC (18) 27.3 0.0273 P1 cortex GGGGAGGTTG (2) 18.2 0.0182 P1 cortex ATGTGGTGTG (2) 4.5 0.0045 P1 cortex GATTAAAACA (3) 4.5 0.0045 Hypothalamus GATTAAAACA (3) 21.7 0.0217 Hypothalamus ATGTGGTGTG (2) 10.9 0.0109 Hypothalamus GGGGAGGTTG (2) 1.8 0.0018 Hypothalamus TGTTTAAGCA (2) 1.8 0.0018 Hypothalamus TTTGTCAGTG (5) 1.8 0.0018 E12.5 retina ATGTGGTGTG (2) 33.8 0.0338 E12.5 retina GATTAAAACA (3) 15 0.015 E12.5 retina CCTTTATTCC (18) 5.6 0.0056 E12.5 retina GTTGGAACCT (8) 3.8 0.0038 E12.5 retina AACATTCCCT (4) 1.9 0.0019 E12.5 retina ATGCGGTGTG (3) 1.9 0.0019 E12.5 retina GATTACCATA (2) 1.9 0.0019 E12.5 retina GGGGAGGTTG (2) 1.9 0.0019 E12.5 retina GTAACAAAAA (4) 1.9 0.0019 E12.5 retina GTGGAAGCTG (11) 1.9 0.0019 E12.5 retina TCTTTAGGTT (2) 1.9 0.0019 E12.5 retina TGTACCATTA (3) 1.9 0.0019 E14.5 retina GATTAAAACA (3) 18.2 0.0182 E14.5 retina CCTTTATTCC (18) 12.8 0.0128 E14.5 retina ATGTGGTGTG (2) 9.1 0.0091 E14.5 retina GTGAAGTGTG (3) 7.3 0.0073 E14.5 retina GTTGGAACCT (8) 1.8 0.0018 E14.5 retina TTTGTCAGTG (5) 1.8 0.0018 E14.5 retina TTTTTAAGCA (4) 1.8 0.0018 E16.5 retina ATGTGGTGTG (2) 19.9 0.0199 E16.5 retina GATTAAAACA (3) 18.1 0.0181 E16.5 retina CCTTTATTCC (18) 3.6 0.0036 E16.5 retina GATTACCATA (2) 3.6 0.0036 E16.5 retina GTGGAAGCTG (11) 3.6 0.0036 E16.5 retina TTTGTCAGTG (5) 3.6 0.0036 E16.5 retina AACATTCCCT (4) 1.8 0.0018 E16.5 retina ATGTGGGTGT (2) 1.8 0.0018 E16.5 retina GTGAATGTTT (4) 1.8 0.0018 E16.5 retina TCCCTGAAAA (3) 1.8 0.0018 E18.5 retina GATTAAAACA (3) 29.1 0.0291 E18.5 retina ATGTGGTGTG (2) 14.6 0.0146 E18.5 retina CCTTTATTCC (18) 7.3 0.0073 E18.5 retina TGTACCATTA (3) 5.5 0.0055 E18.5 retina GTTGGAACCT (8) 1.8 0.0018 E18.5 retina TGTTTAAGCA (2) 1.8 0.0018 E18.5 retina TTTGTCAGTG (5) 1.8 0.0018 P0.5 retina ATGTGGTGTG (2) 25.5 0.0255 P0.5 retina GATTAAAACA (3) 9.8 0.0098 P0.5 retina GGGGAGGTTG (2) 5.9 0.0059 P0.5 retina ATGCGGTGTG (3) 3.9 0.0039 P0.5 retina AGGGGGGATC (3) 2 0.002 P0.5 retina CCTTTATTCC (18) 2 0.002 P0.5 retina GCCTTTTATG (2) 2 0.002 P0.5 retina GTAACAAAAA (4) 2 0.002 P0.5 retina GTTGGAACCT (8) 2 0.002 P0.5 retina TGTTTAAGCA (2) 2 0.002 P2.5 retina GATTAAAACA (3) 31.7 0.0317 P2.5 retina ATGTGGTGTG (2) 15.8 0.0158 P2.5 retina CCTTTATTCC (18) 3.5 0.0035 P2.5 retina GGGGAGGTTG (2) 3.5 0.0035 P2.5 retina ATGTGGGTGT (2) 1.8 0.0018 P2.5 retina GTGGAAGCTG (11) 1.8 0.0018 P2.5 retina TCTTTAGGTT (2) 1.8 0.0018 P4.5 retina GATTAAAACA (3) 33.7 0.0337 P4.5 retina CCTTTATTCC (18) 7.9 0.0079 P4.5 retina GTTGGAACCT (8) 7.9 0.0079 P4.5 retina ATGTGGTGTG (2) 4 0.004 P4.5 retina AACATTCCCT (4) 2 0.002 P4.5 retina ATGTGGGTGT (2) 2 0.002 P4.5 retina GATGTGGGTG (13) 2 0.002 P6.5 retina GATTAAAACA (3) 31.7 0.0317 P6.5 retina ATGTGGTGTG (2) 5 0.005 P6.5 retina CCTTTATTCC (18) 5 0.005 P6.5 retina TCCCTGAAAA (3) 5 0.005 P6.5 retina AACATTCCTT (3) 3.3 0.0033 P6.5 retina GCCTTTTATG (2) 3.3 0.0033 P6.5 retina GGGGAGGTTG (2) 1.7 0.0017 P6.5 retina GTGGAAGCTG (11) 1.7 0.0017 P6.5 retina GTTGGAACCT (8) 1.7 0.0017 P6.5 retina TCTTTAGGTT (2) 1.7 0.0017 P10.5 crx- retina ATGTGGTGTG (2) 50.2 0.0502 P10.5 crx- retina GATTAAAACA (3) 14.9 0.0149 P10.5 crx- retina CCTTTATTCC (18) 3.7 0.0037 P10.5 crx- retina TTTTTAAGCA (4) 3.7 0.0037 P10.5 crx- retina AACATTCCTT (3) 1.9 0.0019 P10.5 crx- retina GCCTTTTATG (2) 1.9 0.0019 P10.5 crx- retina GGGGAGGTTG (2) 1.9 0.0019 P10.5 crx- retina GTGAATGTTT (4) 1.9 0.0019 P10.5 crx- retina GTGGAAGCTG (11) 1.9 0.0019 P10.5 crx- retina TGTACCATTA (3) 1.9 0.0019 P10.5 crx+ retina ATGTGGTGTG (2) 19.2 0.0192 P10.5 crx+ retina GATTAAAACA (3) 19.2 0.0192 P10.5 crx+ retina CCTTTATTCC (18) 7.7 0.0077 P10.5 crx+ retina GTTGGAACCT (8) 3.8 0.0038 P10.5 crx+ retina AGGGGGGATC (3) 1.9 0.0019 P10.5 crx+ retina GTAACAAAAA (4) 1.9 0.0019 P10.5 crx+ retina TCCCTGAAAA (3) 1.9 0.0019 P10.5 crx+ retina TCTTTAGGTT (2) 1.9 0.0019 P10.5 crx+ retina TGTACCATTA (3) 1.9 0.0019 Adult retinal GATTAAAACA (3) 18.5 0.0185 Adult retinal GGGGAGGTTG (2) 5.6 0.0056 Adult retinal ATGTGGTGTG (2) 3.7 0.0037 Adult retinal AGGGGGGATC (3) 1.9 0.0019 Adult retinal CCTTTATTCC (18) 1.9 0.0019 Adult retinal GTTGGAACCT (8) 1.9 0.0019 ONL GATTAAAACA (3) 19.2 0.0192 ONL ATGTGGTGTG (2) 1.9 0.0019 ONL CCTTTATTCC (18) 1.9 0.0019 ONL GTTGGAACCT (8) 1.9 0.0019 ONL TTTTTAAGCA (4) 1.9 0.0019