Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.319660	Hmgn2	high mobility group nucleosomal binding domain 2	4	4 D3 (4 62.2 cM)	15331
Gene Ontology	chromatin | DNA binding | DNA packaging | nucleus
Human Homolog	HMGN2[high-mobility group nucleosomal binding domain 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 8 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 133 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTGTTTATG (4) 151.7 0.1517 P8 Cb GC ATCCTTCCCC (3) 19.6 0.0196 P8 Cb GC GGCAGACAAT (2) 8.2 0.0082 P8 Cb GC CCCAAAAGAA (3) 4.9 0.0049 P8 Cb GC TGTCAGTAAC (3) 4.9 0.0049 P8 Cb GC ATTGGTTATG (2) 3.3 0.0033 P8 Cb GC ATCGTTTATG 1.6 0.0016 Cb medulloblastoma ATTGTTTATG (4) 6.9 0.0069 Cb medulloblastoma CCAAAAGAAA 4.6 0.0046 Cb medulloblastoma GCCTCTGCTG (8) 4.6 0.0046 Cb medulloblastoma GGCAGACAAT (2) 2.3 0.0023 P8 GC+1d culture ATTGTTTATG (4) 77.6 0.0776 P8 GC+1d culture ATCCTTCCCC (3) 18.3 0.0183 P8 GC+1d culture GGCAGACAAT (2) 6.8 0.0068 P8 GC+1d culture GCCTCTGCTG (8) 2.3 0.0023 P8 GC+1d culture CCCAAAAGAA (3) 1.1 0.0011 P8 GC+1d culture TGTCAGTAAC (3) 1.1 0.0011 P8 GC+SHH+1d culture ATTGTTTATG (4) 179.1 0.1791 P8 GC+SHH+1d culture ATCCTTCCCC (3) 31.6 0.0316 P8 GC+SHH+1d culture GGCAGACAAT (2) 7 0.007 P8 GC+SHH+1d culture TGTCAGTAAC (3) 4.7 0.0047 P8 GC+SHH+1d culture CCCAAAAAAA (19) 3.5 0.0035 P8 GC+SHH+1d culture CCCAAAAGAA (3) 3.5 0.0035 P8 GC+SHH+1d culture GCTATTACAA (2) 3.5 0.0035 P8 GC+SHH+1d culture TCCTGCCTGA (2) 1.2 0.0012 3T3 fibroblasts ATTGTTTATG (4) 10.5 0.0105 3T3 fibroblasts GGCAGACAAT (2) 3.5 0.0035 E15 cortex ATTGTTTATG (4) 9.9 0.0099 E15 cortex TCCTGCCTGA (2) 9.9 0.0099 E15 cortex ATTGGTTATG (2) 4.9 0.0049 E15 cortex CCCAAAAAAA (19) 4.9 0.0049 E15 cortex TGTCAGTAAC (3) 4.9 0.0049 P1 cortex ATTGTTTATG (4) 22.7 0.0227 P1 cortex CCCAAAAGAA (3) 4.5 0.0045 P1 cortex GCCTCTGCTG (8) 4.5 0.0045 P1 cortex GCTATTACAA (2) 4.5 0.0045 Hypothalamus ATTGTTTATG (4) 14.5 0.0145 Hypothalamus GCCTCTGCTG (8) 1.8 0.0018 Hypothalamus GTATTTCAGG (5) 1.8 0.0018 Hypothalamus TGTCAGTAAC (3) 1.8 0.0018 E12.5 retina ATTGTTTATG (4) 159.6 0.1596 E12.5 retina ATCCTTCCCC (3) 20.7 0.0207 E12.5 retina CCCAAAAGAA (3) 5.6 0.0056 E12.5 retina ATTGGTTATG (2) 1.9 0.0019 E12.5 retina GGCAGACAAT (2) 1.9 0.0019 E12.5 retina GTATTTCAGG (5) 1.9 0.0019 E12.5 retina TGTCAGTAAC (3) 1.9 0.0019 E14.5 retina ATTGTTTATG (4) 242.3 0.2423 E14.5 retina GGCAGACAAT (2) 10.9 0.0109 E14.5 retina ATCCTTCCCC (3) 5.5 0.0055 E14.5 retina GTATTTCAGG (5) 3.6 0.0036 E14.5 retina ATTGGTTATG (2) 1.8 0.0018 E14.5 retina CCCAAAAGAA (3) 1.8 0.0018 E16.5 retina ATTGTTTATG (4) 170.2 0.1702 E16.5 retina ATCCTTCCCC (3) 14.5 0.0145 E16.5 retina GGCAGACAAT (2) 7.2 0.0072 E16.5 retina TCCTGCCTGA (2) 5.4 0.0054 E16.5 retina TGTCAGTAAC (3) 3.6 0.0036 E16.5 retina ATCGTTTATG 1.8 0.0018 E16.5 retina ATTGGTTATG (2) 1.8 0.0018 E16.5 retina CCCAAAAAAA (19) 1.8 0.0018 E18.5 retina ATTGTTTATG (4) 351.1 0.3511 E18.5 retina GGCAGACAAT (2) 36.4 0.0364 E18.5 retina ATCCTTCCCC (3) 10.9 0.0109 E18.5 retina GTATTTCAGG (5) 7.3 0.0073 E18.5 retina CCCAAAAAAA (19) 3.6 0.0036 E18.5 retina ATCGTTTATG 1.8 0.0018 E18.5 retina ATTGGTTATG (2) 1.8 0.0018 E18.5 retina GCCTCTGCTG (8) 1.8 0.0018 E18.5 retina TCCTGCCTGA (2) 1.8 0.0018 P0.5 retina ATTGTTTATG (4) 186.4 0.1864 P0.5 retina ATCCTTCCCC (3) 47.1 0.0471 P0.5 retina GGCAGACAAT (2) 21.6 0.0216 P0.5 retina TGTCAGTAAC (3) 5.9 0.0059 P0.5 retina ATTGGTTATG (2) 2 0.002 P0.5 retina CCCAAAAAAA (19) 2 0.002 P0.5 retina CCCAAAAGAA (3) 2 0.002 P2.5 retina ATTGTTTATG (4) 325.6 0.3256 P2.5 retina ATCCTTCCCC (3) 29.9 0.0299 P2.5 retina GGCAGACAAT (2) 15.8 0.0158 P2.5 retina CCCAAAAGAA (3) 5.3 0.0053 P2.5 retina ATTGGTTATG (2) 3.5 0.0035 P2.5 retina ATCGTTTATG 1.8 0.0018 P2.5 retina CCCAAAAAAA (19) 1.8 0.0018 P2.5 retina TCCTGCCTGA (2) 1.8 0.0018 P4.5 retina ATTGTTTATG (4) 410.1 0.4101 P4.5 retina ATCCTTCCCC (3) 17.8 0.0178 P4.5 retina GGCAGACAAT (2) 17.8 0.0178 P4.5 retina ATTGGTTATG (2) 7.9 0.0079 P4.5 retina CCCAAAAAAA (19) 2 0.002 P4.5 retina GCTATTACAA (2) 2 0.002 P4.5 retina GTATTTCAGG (5) 2 0.002 P6.5 retina ATTGTTTATG (4) 405.2 0.4052 P6.5 retina ATCCTTCCCC (3) 51.7 0.0517 P6.5 retina GGCAGACAAT (2) 20 0.02 P6.5 retina ATTGGTTATG (2) 8.3 0.0083 P6.5 retina CCCAAAAGAA (3) 5 0.005 P6.5 retina TGTCAGTAAC (3) 5 0.005 P6.5 retina CCCAAAAAAA (19) 3.3 0.0033 P6.5 retina GGCAGACAAA (2) 3.3 0.0033 P6.5 retina GCCTCTGCTG (8) 1.7 0.0017 P6.5 retina GCTATTACAA (2) 1.7 0.0017 P6.5 retina TCCTGCCTGA (2) 1.7 0.0017 P10.5 crx- retina ATTGTTTATG (4) 159.8 0.1598 P10.5 crx- retina GGCAGACAAT (2) 20.4 0.0204 P10.5 crx- retina CCCAAAAGAA (3) 14.9 0.0149 P10.5 crx- retina ATCCTTCCCC (3) 7.4 0.0074 P10.5 crx- retina ATTGGTTATG (2) 3.7 0.0037 P10.5 crx- retina GCCTCTGCTG (8) 1.9 0.0019 P10.5 crx- retina TGTCAGTAAC (3) 1.9 0.0019 P10.5 crx+ retina ATTGTTTATG (4) 151.9 0.1519 P10.5 crx+ retina ATCCTTCCCC (3) 51.9 0.0519 P10.5 crx+ retina GGCAGACAAT (2) 17.3 0.0173 P10.5 crx+ retina CCCAAAAGAA (3) 5.8 0.0058 P10.5 crx+ retina GCCTCTGCTG (8) 1.9 0.0019 P10.5 crx+ retina GGCAGACAAA (2) 1.9 0.0019 P10.5 crx+ retina GTATTTCAGG (5) 1.9 0.0019 P10.5 crx+ retina TCCTGCCTGA (2) 1.9 0.0019 P10.5 crx+ retina TGTCAGTAAC (3) 1.9 0.0019 Adult retinal ATTGTTTATG (4) 35.2 0.0352 Adult retinal ATCCTTCCCC (3) 9.3 0.0093 Adult retinal CCCAAAAAAA (19) 1.9 0.0019 Adult retinal CCCAAAAGAA (3) 1.9 0.0019 Adult retinal GCCTCTGCTG (8) 1.9 0.0019 Adult retinal GGCAGACAAT (2) 1.9 0.0019 Adult retinal TGTCAGTAAC (3) 1.9 0.0019 ONL ATTGTTTATG (4) 99.6 0.0996 ONL ATCCTTCCCC (3) 7.7 0.0077 ONL GGCAGACAAT (2) 5.7 0.0057 ONL ATCGTTTATG 1.9 0.0019 ONL CCCAAAAAAA (19) 1.9 0.0019 ONL CCCAAAAGAA (3) 1.9 0.0019 ONL TCCTGCCTGA (2) 1.9 0.0019