Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.32047
Zdhhc21
zinc finger, DHHC domain containing 21
4
68268
Mm.32047
D130004H04Rik
RIKEN cDNA D130004H04 gene
4
100255
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 89 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CACACACACA (
106
)
11.4
0.0114
P8 Cb GC
TGGGGTCTCA (
3
)
8.2
0.0082
P8 Cb GC
TTTTTTTTTT (
433
)
4.9
0.0049
P8 Cb GC
GGCTTGATTG
(
5
)
1.6
0.0016
Cb medulloblastoma
CACACACACA (
106
)
32.4
0.0324
Cb medulloblastoma
TGGGGTCTCA (
3
)
13.9
0.0139
Cb medulloblastoma
TAATATTCAA
(
4
)
4.6
0.0046
Cb medulloblastoma
CTTTCATTAT (
4
)
2.3
0.0023
Cb medulloblastoma
TATTGCTAAA
(
2
)
2.3
0.0023
Cb medulloblastoma
TTTTTTTTTT (
433
)
2.3
0.0023
P8 GC+1d culture
TTTTTTTTTT (
433
)
13.7
0.0137
P8 GC+1d culture
CACACACACA (
106
)
6.8
0.0068
P8 GC+1d culture
TAATATTCAA
(
4
)
3.4
0.0034
P8 GC+1d culture
TGGGGTCTCA (
3
)
2.3
0.0023
P8 GC+1d culture
CTTTCATTAT (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGGGTCTCA (
3
)
10.5
0.0105
P8 GC+SHH+1d culture
CACACACACA (
106
)
9.4
0.0094
P8 GC+SHH+1d culture
TTTTTTTTTT (
433
)
5.9
0.0059
P8 GC+SHH+1d culture
TAATATTCAA
(
4
)
3.5
0.0035
P8 GC+SHH+1d culture
GGCTTGATTG
(
5
)
1.2
0.0012
3T3 fibroblasts
CACACACACA (
106
)
17.5
0.0175
E15 cortex
TGGGGTCTCA (
3
)
14.8
0.0148
E15 cortex
CACACACACA (
106
)
4.9
0.0049
E15 cortex
TTTTTTTTTT (
433
)
4.9
0.0049
P1 cortex
CACACACACA (
106
)
27.3
0.0273
P1 cortex
TGGGGTCTCA (
3
)
9.1
0.0091
P1 cortex
AAGGACGGTG
(
4
)
4.5
0.0045
P1 cortex
CTTTCATTAT (
4
)
4.5
0.0045
P1 cortex
TTTTTTTTTT (
433
)
4.5
0.0045
Hypothalamus
CACACACACA (
106
)
96
0.096
Hypothalamus
TGGGGTCTCA (
3
)
14.5
0.0145
Hypothalamus
TTTTTTTTTT (
433
)
7.2
0.0072
Hypothalamus
CTTTCATTAT (
4
)
1.8
0.0018
Hypothalamus
TAATATTCAA
(
4
)
1.8
0.0018
E12.5 retina
TGGGGTCTCA (
3
)
9.4
0.0094
E12.5 retina
TTTTTTTTTT (
433
)
7.5
0.0075
E12.5 retina
CACACACACA (
106
)
3.8
0.0038
E12.5 retina
GGCTTGATTG
(
5
)
3.8
0.0038
E12.5 retina
TAATATTCAA
(
4
)
1.9
0.0019
E14.5 retina
TTTTTTTTTT (
433
)
23.7
0.0237
E14.5 retina
CACACACACA (
106
)
18.2
0.0182
E14.5 retina
TGGGGTCTCA (
3
)
3.6
0.0036
E14.5 retina
AATAAAACAA (
6
)
1.8
0.0018
E16.5 retina
CACACACACA (
106
)
12.7
0.0127
E16.5 retina
TTTTTTTTTT (
433
)
5.4
0.0054
E16.5 retina
TGGGGTCTCA (
3
)
3.6
0.0036
E16.5 retina
GCTACTATAT (
4
)
1.8
0.0018
E18.5 retina
TTTTTTTTTT (
433
)
10.9
0.0109
E18.5 retina
CACACACACA (
106
)
5.5
0.0055
E18.5 retina
CTTTCATTAT (
4
)
3.6
0.0036
E18.5 retina
TGGGGTCTCA (
3
)
3.6
0.0036
P0.5 retina
TGGGGTCTCA (
3
)
9.8
0.0098
P0.5 retina
TTTTTTTTTT (
433
)
9.8
0.0098
P0.5 retina
CACACACACA (
106
)
7.9
0.0079
P0.5 retina
TAATATTCAA
(
4
)
2
0.002
P2.5 retina
CACACACACA (
106
)
21.1
0.0211
P2.5 retina
TGGGGTCTCA (
3
)
10.6
0.0106
P2.5 retina
TTTTTTTTTT (
433
)
7
0.007
P2.5 retina
TAATATTCAA
(
4
)
3.5
0.0035
P2.5 retina
GCTACTATAT (
4
)
1.8
0.0018
P2.5 retina
TATTGCTAAA
(
2
)
1.8
0.0018
P4.5 retina
TGGGGTCTCA (
3
)
19.8
0.0198
P4.5 retina
TTTTTTTTTT (
433
)
9.9
0.0099
P4.5 retina
CACACACACA (
106
)
7.9
0.0079
P4.5 retina
GGCTTGATTG
(
5
)
4
0.004
P4.5 retina
CTTTCATTAT (
4
)
2
0.002
P4.5 retina
GCTACTATAT (
4
)
2
0.002
P4.5 retina
TAATATTCAA
(
4
)
2
0.002
P6.5 retina
TGGGGTCTCA (
3
)
16.7
0.0167
P6.5 retina
CACACACACA (
106
)
8.3
0.0083
P6.5 retina
TTTTTTTTTT (
433
)
8.3
0.0083
P6.5 retina
TAATATTCAA
(
4
)
1.7
0.0017
P6.5 retina
TATTGCTAAA
(
2
)
1.7
0.0017
P10.5 crx- retina
TGGGGTCTCA (
3
)
14.9
0.0149
P10.5 crx- retina
CACACACACA (
106
)
5.6
0.0056
P10.5 crx- retina
TAATATTCAA
(
4
)
3.7
0.0037
P10.5 crx- retina
CTTTCATTAT (
4
)
1.9
0.0019
P10.5 crx+ retina
TGGGGTCTCA (
3
)
9.6
0.0096
P10.5 crx+ retina
CACACACACA (
106
)
7.7
0.0077
P10.5 crx+ retina
TTTTTTTTTT (
433
)
3.8
0.0038
Adult retinal
CACACACACA (
106
)
16.7
0.0167
Adult retinal
TTTTTTTTTT (
433
)
7.4
0.0074
Adult retinal
AATAAAACAA (
6
)
1.9
0.0019
Adult retinal
TGGGGTCTCA (
3
)
1.9
0.0019
ONL
CACACACACA (
106
)
21.1
0.0211
ONL
AATAAAACAA (
6
)
3.8
0.0038
ONL
TGGGGTCTCA (
3
)
3.8
0.0038
ONL
TTTTTTTTTT (
433
)
3.8
0.0038
ONL
CTTTCATTAT (
4
)
1.9
0.0019
