Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.321828	Pabpc1	poly A binding protein, cytoplasmic 1	15		18458
Gene Ontology	RNA binding
Human Homolog	PABPC1[poly(A) binding protein, cytoplasmic 1] | PABPC1[poly(A) binding protein, cytoplasmic 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 123 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTCGAGTCTC (4) 44 0.044 P8 Cb GC GCAGCTATCC (4) 4.9 0.0049 P8 Cb GC CCAGGTGTAG (3) 3.3 0.0033 P8 Cb GC TAAGGTGGTT 3.3 0.0033 P8 Cb GC AAGATGCGCA (2) 1.6 0.0016 P8 Cb GC ACAACATATT (2) 1.6 0.0016 P8 Cb GC GGGATTGCTT (2) 1.6 0.0016 P8 Cb GC GTTACATCAA (2) 1.6 0.0016 Cb medulloblastoma GGGTAGCTGG (3) 2.3 0.0023 Cb medulloblastoma GTTACATCAA (2) 2.3 0.0023 Cb medulloblastoma TGAAATAATT (4) 2.3 0.0023 Cb medulloblastoma TGTCTTAAAA (2) 2.3 0.0023 P8 GC+1d culture CTCGAGTCTC (4) 17.1 0.0171 P8 GC+1d culture GGGTAGCTGG (3) 10.3 0.0103 P8 GC+1d culture TAAAGTAAAT 3.4 0.0034 P8 GC+1d culture CCAGGTGTAG (3) 1.1 0.0011 P8 GC+1d culture GATGTAAAAA (4) 1.1 0.0011 P8 GC+1d culture GCAGCTATCC (4) 1.1 0.0011 P8 GC+1d culture TGAAATAATT (4) 1.1 0.0011 P8 GC+1d culture TGTCTTAAAA (2) 1.1 0.0011 P8 GC+SHH+1d culture CTCGAGTCTC (4) 36.3 0.0363 P8 GC+SHH+1d culture GGGTAGCTGG (3) 10.5 0.0105 P8 GC+SHH+1d culture TGAAATAATT (4) 4.7 0.0047 P8 GC+SHH+1d culture TAAAGTAAAT 3.5 0.0035 P8 GC+SHH+1d culture GATGTAAAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture GCAGCTATCC (4) 1.2 0.0012 P8 GC+SHH+1d culture GGGATTGCTT (2) 1.2 0.0012 P8 GC+SHH+1d culture GTGGACTCTG (4) 1.2 0.0012 P8 GC+SHH+1d culture GTTACATCAA (2) 1.2 0.0012 3T3 fibroblasts CTCGAGTCTC (4) 175.2 0.1752 3T3 fibroblasts GGGTAGCTGG (3) 17.5 0.0175 3T3 fibroblasts GTAACTTGTG (4) 3.5 0.0035 E15 cortex CTCGAGTCTC (4) 19.8 0.0198 P1 cortex CTCGAGTCTC (4) 13.6 0.0136 P1 cortex AAAGGATGTT (4) 4.5 0.0045 P1 cortex TGAAATAATT (4) 4.5 0.0045 Hypothalamus TGAAATAATT (4) 5.4 0.0054 Hypothalamus CTCGAGTCTC (4) 3.6 0.0036 Hypothalamus AAAGGATGTT (4) 1.8 0.0018 Hypothalamus AAGATGCGCA (2) 1.8 0.0018 Hypothalamus CCAGGTGTAG (3) 1.8 0.0018 Hypothalamus GATGTAAAAA (4) 1.8 0.0018 Hypothalamus GGGTAGCTGG (3) 1.8 0.0018 Hypothalamus GTGGACTCTG (4) 1.8 0.0018 E12.5 retina CTCGAGTCTC (4) 30 0.03 E12.5 retina GGGTAGCTGG (3) 18.8 0.0188 E12.5 retina AAGATGCGCA (2) 3.8 0.0038 E12.5 retina GTTACATCAA (2) 3.8 0.0038 E12.5 retina TAAGGTGGTT 3.8 0.0038 E12.5 retina ACAACATATT (2) 1.9 0.0019 E12.5 retina GATGTAAAAA (4) 1.9 0.0019 E12.5 retina TAAAGTAAAT 1.9 0.0019 E14.5 retina CTCGAGTCTC (4) 9.1 0.0091 E14.5 retina TAAAGTAAAT 3.6 0.0036 E14.5 retina CACACCACAC (9) 1.8 0.0018 E14.5 retina GGGTAGCTGG (3) 1.8 0.0018 E14.5 retina GTTACATCAA (2) 1.8 0.0018 E14.5 retina TAAGGTGGTT 1.8 0.0018 E14.5 retina TGAAATAATT (4) 1.8 0.0018 E16.5 retina CTCGAGTCTC (4) 9.1 0.0091 E16.5 retina AAGATGCGCA (2) 5.4 0.0054 E16.5 retina TGAAATAATT (4) 5.4 0.0054 E16.5 retina ACAACATATT (2) 1.8 0.0018 E16.5 retina GCAGCTATCC (4) 1.8 0.0018 E16.5 retina GTAACTTGTG (4) 1.8 0.0018 E16.5 retina GTGGACTCTG (4) 1.8 0.0018 E18.5 retina CTCGAGTCTC (4) 7.3 0.0073 E18.5 retina GATGTAAAAA (4) 5.5 0.0055 E18.5 retina TGAAATAATT (4) 5.5 0.0055 E18.5 retina ACAACATATT (2) 1.8 0.0018 E18.5 retina GCAGCTATCC (4) 1.8 0.0018 E18.5 retina GTTACATCAA (2) 1.8 0.0018 E18.5 retina TAAAGTAAAT 1.8 0.0018 E18.5 retina TGTCTTAAAA (2) 1.8 0.0018 P0.5 retina CTCGAGTCTC (4) 37.3 0.0373 P0.5 retina GGGTAGCTGG (3) 9.8 0.0098 P0.5 retina TAAAGTAAAT 2 0.002 P2.5 retina CTCGAGTCTC (4) 10.6 0.0106 P2.5 retina GATGTAAAAA (4) 3.5 0.0035 P2.5 retina GCCAGCTTTA (3) 3.5 0.0035 P2.5 retina TAAAGTAAAT 3.5 0.0035 P2.5 retina AAAGGATGTT (4) 1.8 0.0018 P2.5 retina CACACCACAC (9) 1.8 0.0018 P2.5 retina GGGTAGCTGG (3) 1.8 0.0018 P2.5 retina TAAGGTGGTT 1.8 0.0018 P2.5 retina TGAAATAATT (4) 1.8 0.0018 P4.5 retina AAGATGCGCA (2) 2 0.002 P4.5 retina ACAACATATT (2) 2 0.002 P4.5 retina CCAGGTGTAG (3) 2 0.002 P4.5 retina CTCGAGTCTC (4) 2 0.002 P4.5 retina GATGTAAAAA (4) 2 0.002 P4.5 retina GTTACATCAA (2) 2 0.002 P4.5 retina TAAGGTGGTT 2 0.002 P6.5 retina CTCGAGTCTC (4) 13.3 0.0133 P6.5 retina TAAGGTGGTT 5 0.005 P6.5 retina GATGTAAAAA (4) 3.3 0.0033 P6.5 retina GCAGCTATCC (4) 3.3 0.0033 P6.5 retina AAAGGATGTT (4) 1.7 0.0017 P6.5 retina CACACCACAC (9) 1.7 0.0017 P6.5 retina GGGATTGCTT (2) 1.7 0.0017 P6.5 retina TGAAATAATT (4) 1.7 0.0017 P10.5 crx- retina CTCGAGTCTC (4) 11.1 0.0111 P10.5 crx- retina GATGTAAAAA (4) 1.9 0.0019 P10.5 crx- retina GTAACTTGTG (4) 1.9 0.0019 P10.5 crx+ retina CTCGAGTCTC (4) 5.8 0.0058 P10.5 crx+ retina GATGTAAAAA (4) 5.8 0.0058 P10.5 crx+ retina GCAGCTATCC (4) 3.8 0.0038 P10.5 crx+ retina GGGTAGCTGG (3) 3.8 0.0038 P10.5 crx+ retina GCCAGCTTTA (3) 1.9 0.0019 P10.5 crx+ retina TAAAGTAAAT 1.9 0.0019 P10.5 crx+ retina TAAGGTGGTT 1.9 0.0019 Adult retinal CTCGAGTCTC (4) 11.1 0.0111 Adult retinal TGAAATAATT (4) 5.6 0.0056 Adult retinal GATGTAAAAA (4) 1.9 0.0019 Adult retinal GGGATTGCTT (2) 1.9 0.0019 Adult retinal GGGTAGCTGG (3) 1.9 0.0019 ONL GATGTAAAAA (4) 5.7 0.0057 ONL CTCGAGTCTC (4) 3.8 0.0038 ONL GGGATTGCTT (2) 3.8 0.0038 ONL GTTACATCAA (2) 3.8 0.0038 ONL TGAAATAATT (4) 3.8 0.0038 ONL GCCAGCTTTA (3) 1.9 0.0019 ONL TAAAGTAAAT 1.9 0.0019