Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.32368	A630036P20Rik	RIKEN cDNA A630036P20 gene	5		320666
Mm.32368	Ccm1	cerebral cavernous malformations 1	5		79264
Gene Ontology	protein binding | small GTPase regulatory/interacting protein activity
Human Homolog	CCM1[cerebral cavernous malformations 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 70 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAGGCAGACT (2) 4.9 0.0049 P8 Cb GC ATGCTTTATA (4) 1.6 0.0016 P8 Cb GC ATTCCGAATT (107) 1.6 0.0016 P8 Cb GC ATTTGAATAA (3) 1.6 0.0016 P8 Cb GC TTGCTGTACC (3) 1.6 0.0016 P8 Cb GC TTGGTTTTCA (5) 1.6 0.0016 Cb medulloblastoma TTTGGTGTGT (4) 4.6 0.0046 Cb medulloblastoma ATGCTTTATA (4) 2.3 0.0023 Cb medulloblastoma ATTTGAATAA (3) 2.3 0.0023 Cb medulloblastoma TGACAAAATT (5) 2.3 0.0023 P8 GC+1d culture TAGGCAGACT (2) 4.6 0.0046 P8 GC+1d culture ATTTGAATAA (3) 2.3 0.0023 P8 GC+1d culture TTGCTGTACC (3) 2.3 0.0023 P8 GC+1d culture GATTTCAAAA (6) 1.1 0.0011 P8 GC+SHH+1d culture TAGGCAGACT (2) 3.5 0.0035 P8 GC+SHH+1d culture TTGCTGTACC (3) 2.3 0.0023 P1 cortex ATTTGAATAA (3) 4.5 0.0045 P1 cortex TGACAAAATT (5) 4.5 0.0045 Hypothalamus TTGGTTTTCA (5) 5.4 0.0054 Hypothalamus AAATTAATTT (5) 1.8 0.0018 Hypothalamus ATTTGAATAA (3) 1.8 0.0018 Hypothalamus TTTGGTGTGT (4) 1.8 0.0018 E12.5 retina ATTTGAATAA (3) 3.8 0.0038 E12.5 retina TAGGCAGACT (2) 3.8 0.0038 E12.5 retina AACTTCCTCA (2) 1.9 0.0019 E14.5 retina TAGGCAGACT (2) 3.6 0.0036 E14.5 retina TTTGGTGTGT (4) 1.8 0.0018 E16.5 retina TAGGCAGACT (2) 5.4 0.0054 E16.5 retina ATGCTTTATA (4) 1.8 0.0018 E16.5 retina ATTTGAATAA (3) 1.8 0.0018 E18.5 retina ATTTGAATAA (3) 5.5 0.0055 E18.5 retina ATGCTTTATA (4) 1.8 0.0018 E18.5 retina TAGGCAGACT (2) 1.8 0.0018 E18.5 retina TTGCTGTACC (3) 1.8 0.0018 P0.5 retina TAGGCAGACT (2) 3.9 0.0039 P0.5 retina AACTTCCTCA (2) 2 0.002 P0.5 retina ATTTGAATAA (3) 2 0.002 P0.5 retina GATTTCAAAA (6) 2 0.002 P0.5 retina TTTGGTGTGT (4) 2 0.002 P2.5 retina TAGGCAGACT (2) 8.8 0.0088 P2.5 retina ATTTGAATAA (3) 5.3 0.0053 P2.5 retina TTGCTGTACC (3) 3.5 0.0035 P4.5 retina ATTTGAATAA (3) 5.9 0.0059 P4.5 retina ATTCCGAATT (107) 2 0.002 P4.5 retina TAGGCAGACT (2) 2 0.002 P6.5 retina ATTTGAATAA (3) 8.3 0.0083 P6.5 retina ATTCCGAATT (107) 3.3 0.0033 P6.5 retina TTGCTGTACC (3) 3.3 0.0033 P6.5 retina AAATTAATTT (5) 1.7 0.0017 P6.5 retina AACTTCCTCA (2) 1.7 0.0017 P6.5 retina TAGGCAGACT (2) 1.7 0.0017 P6.5 retina TTGGTTTTCA (5) 1.7 0.0017 P10.5 crx- retina TAGGCAGACT (2) 9.3 0.0093 P10.5 crx- retina GATTTCAAAA (6) 5.6 0.0056 P10.5 crx- retina AAATTAATTT (5) 1.9 0.0019 P10.5 crx- retina ATGCTTTATA (4) 1.9 0.0019 P10.5 crx- retina ATTTGAATAA (3) 1.9 0.0019 P10.5 crx+ retina TAGGCAGACT (2) 3.8 0.0038 P10.5 crx+ retina TTGGTTTTCA (5) 3.8 0.0038 P10.5 crx+ retina AACTTCCTCA (2) 1.9 0.0019 P10.5 crx+ retina ATGCTTTATA (4) 1.9 0.0019 P10.5 crx+ retina ATTTGAATAA (3) 1.9 0.0019 P10.5 crx+ retina TTTGGTGTGT (4) 1.9 0.0019 Adult retinal ATTTGAATAA (3) 1.9 0.0019 Adult retinal TAGGCAGACT (2) 1.9 0.0019 Adult retinal TTTGGTGTGT (4) 1.9 0.0019 ONL ATTCCGAATT (107) 3.8 0.0038 ONL ATTTGAATAA (3) 3.8 0.0038 ONL ATGCTTTATA (4) 1.9 0.0019 ONL TGACAAAATT (5) 1.9 0.0019