Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.328549	Eif4a1	eukaryotic translation initiation factor 4A1	11	11 39.0 cM	13681
Gene Ontology	ATP binding | ATP dependent helicase activity | DNA binding | helicase activity | hydrolase activity | nucleic acid binding | protein biosynthesis | RNA binding | translation initiation factor activity
Human Homolog	EIF4A1[eukaryotic translation initiation factor 4A, isoform 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 128 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGACCGAAG (2) 35.9 0.0359 P8 Cb GC TCTAAGTACG (3) 31 0.031 P8 Cb GC TTTGTAATAT (5) 6.5 0.0065 P8 Cb GC GTGAACCCAA (2) 4.9 0.0049 P8 Cb GC AATCTCTCAG (2) 3.3 0.0033 P8 Cb GC AGGGAGTTCC (4) 3.3 0.0033 P8 Cb GC CAGAACAAGT (4) 3.3 0.0033 P8 Cb GC AAGCAGATGA (7) 1.6 0.0016 P8 Cb GC AGCAACACAG 1.6 0.0016 P8 Cb GC GATGAAGCAG (5) 1.6 0.0016 P8 Cb GC GGAGAAACAG (6) 1.6 0.0016 P8 Cb GC TTTTGTATAG (4) 1.6 0.0016 Cb medulloblastoma TCTAAGTACG (3) 46.2 0.0462 Cb medulloblastoma GTGAACCCAA (2) 6.9 0.0069 Cb medulloblastoma GTGACCGAAG (2) 6.9 0.0069 Cb medulloblastoma TGACATTTTA (7) 4.6 0.0046 Cb medulloblastoma AAGCAGATGA (7) 2.3 0.0023 Cb medulloblastoma CCTTCTGAAG (5) 2.3 0.0023 Cb medulloblastoma GGAGAAACAG (6) 2.3 0.0023 Cb medulloblastoma TTTGTAATAT (5) 2.3 0.0023 P8 GC+1d culture GTGACCGAAG (2) 30.8 0.0308 P8 GC+1d culture GTGAACCCAA (2) 6.8 0.0068 P8 GC+1d culture CCTTCTGAAG (5) 2.3 0.0023 P8 GC+1d culture TTTGTAATAT (5) 1.1 0.0011 P8 GC+SHH+1d culture GTGACCGAAG (2) 42.2 0.0422 P8 GC+SHH+1d culture TCTAAGTACG (3) 7 0.007 P8 GC+SHH+1d culture TTTGTAATAT (5) 5.9 0.0059 P8 GC+SHH+1d culture GTGAACCCAA (2) 3.5 0.0035 P8 GC+SHH+1d culture AGCAACACAG 2.3 0.0023 P8 GC+SHH+1d culture GATGAAGCAG (5) 1.2 0.0012 P8 GC+SHH+1d culture TTTGGGGGGG (4) 1.2 0.0012 3T3 fibroblasts GTGACCGAAG (2) 80.6 0.0806 E15 cortex GTGACCGAAG (2) 39.6 0.0396 E15 cortex GTGAACCCAA (2) 9.9 0.0099 E15 cortex AAGCAGATGA (7) 4.9 0.0049 E15 cortex CACGGAGATA (2) 4.9 0.0049 E15 cortex GATGAAGCAG (5) 4.9 0.0049 P1 cortex GTGACCGAAG (2) 9.1 0.0091 Hypothalamus GTGAACCCAA (2) 7.2 0.0072 Hypothalamus GTGACCGAAG (2) 5.4 0.0054 Hypothalamus GATGAAGCAG (5) 3.6 0.0036 Hypothalamus GGAGAAACAG (6) 1.8 0.0018 Hypothalamus TTTGTAATAT (5) 1.8 0.0018 E12.5 retina GTGACCGAAG (2) 31.9 0.0319 E12.5 retina AGCAACACAG 1.9 0.0019 E12.5 retina GATGAAGCAG (5) 1.9 0.0019 E12.5 retina GTGAACCCAA (2) 1.9 0.0019 E14.5 retina AATCTCTCAG (2) 5.5 0.0055 E14.5 retina GTGAACCCAA (2) 3.6 0.0036 E14.5 retina AGCAACACAG 1.8 0.0018 E14.5 retina CTTAACCGGA (4) 1.8 0.0018 E14.5 retina GTGACCGAAG (2) 1.8 0.0018 E14.5 retina TTTTGTAATA (3) 1.8 0.0018 E16.5 retina GTGACCGAAG (2) 5.4 0.0054 E16.5 retina AGCAACACAG 3.6 0.0036 E16.5 retina CACGGAGATA (2) 3.6 0.0036 E16.5 retina GATGAAGCAG (5) 3.6 0.0036 E16.5 retina GTGAACCCAA (2) 3.6 0.0036 E16.5 retina AATCTCTCAG (2) 1.8 0.0018 E16.5 retina TCTAAGTACG (3) 1.8 0.0018 E16.5 retina TTTGGGGGGG (4) 1.8 0.0018 E16.5 retina TTTTGTATAG (4) 1.8 0.0018 E18.5 retina GTGACCGAAG (2) 16.4 0.0164 E18.5 retina GTGGCCGAAA (5) 5.5 0.0055 E18.5 retina GTGAACCCAA (2) 3.6 0.0036 E18.5 retina TCTAAGTACG (3) 3.6 0.0036 E18.5 retina AGCAACACAG 1.8 0.0018 E18.5 retina AGGGAGTTCC (4) 1.8 0.0018 E18.5 retina CCTTCTGAAG (5) 1.8 0.0018 E18.5 retina CTTAACCGGA (4) 1.8 0.0018 E18.5 retina GATGAAGCAG (5) 1.8 0.0018 E18.5 retina GGAGAAACAG (6) 1.8 0.0018 P0.5 retina GTGACCGAAG (2) 27.5 0.0275 P0.5 retina GTGAACCCAA (2) 13.7 0.0137 P0.5 retina AGCAACACAG 2 0.002 P0.5 retina CCTGCTTTGG (4) 2 0.002 P0.5 retina GGAGAAACAG (6) 2 0.002 P0.5 retina GTGGCCGAAA (5) 2 0.002 P2.5 retina GTGACCGAAG (2) 12.3 0.0123 P2.5 retina GTGGCCGAAA (5) 10.6 0.0106 P2.5 retina TTTGTAATAT (5) 7 0.007 P2.5 retina GTGAACCCAA (2) 5.3 0.0053 P2.5 retina GGAGAAACAG (6) 1.8 0.0018 P2.5 retina TCTAAGTACG (3) 1.8 0.0018 P2.5 retina TTTTGTAATA (3) 1.8 0.0018 P4.5 retina GTGAACCCAA (2) 13.9 0.0139 P4.5 retina GTGACCGAAG (2) 7.9 0.0079 P4.5 retina GTGGCCGAAA (5) 7.9 0.0079 P4.5 retina TTTGTAATAT (5) 5.9 0.0059 P4.5 retina TGACATTTTA (7) 2 0.002 P4.5 retina TTTTGTATAG (4) 2 0.002 P6.5 retina GTGACCGAAG (2) 20 0.02 P6.5 retina GTGAACCCAA (2) 11.7 0.0117 P6.5 retina GTGGCCGAAA (5) 3.3 0.0033 P6.5 retina TTTGGGGGGG (4) 3.3 0.0033 P6.5 retina TTTGTAATAT (5) 3.3 0.0033 P6.5 retina TTTTGTAATA (3) 3.3 0.0033 P6.5 retina CCTGCTTTGG (4) 1.7 0.0017 P6.5 retina GGAGAAACAG (6) 1.7 0.0017 P6.5 retina TCTAAGTACG (3) 1.7 0.0017 P10.5 crx- retina GTGAACCCAA (2) 14.9 0.0149 P10.5 crx- retina GTGACCGAAG (2) 5.6 0.0056 P10.5 crx- retina GGAGAAACAG (6) 3.7 0.0037 P10.5 crx- retina AAGCAGATGA (7) 1.9 0.0019 P10.5 crx- retina AGGGAGTTCC (4) 1.9 0.0019 P10.5 crx- retina GTGGCCGAAA (5) 1.9 0.0019 P10.5 crx+ retina GTGACCGAAG (2) 32.7 0.0327 P10.5 crx+ retina TCTAAGTACG (3) 11.5 0.0115 P10.5 crx+ retina GGAGAAACAG (6) 7.7 0.0077 P10.5 crx+ retina GTGGCCGAAA (5) 7.7 0.0077 P10.5 crx+ retina GTGAACCCAA (2) 5.8 0.0058 P10.5 crx+ retina AAGCAGATGA (7) 1.9 0.0019 P10.5 crx+ retina AGCAACACAG 1.9 0.0019 P10.5 crx+ retina CCTTCTGAAG (5) 1.9 0.0019 P10.5 crx+ retina CTTAACCGGA (4) 1.9 0.0019 P10.5 crx+ retina TGACATTTTA (7) 1.9 0.0019 P10.5 crx+ retina TTTGTAATAT (5) 1.9 0.0019 Adult retinal GTGAACCCAA (2) 9.3 0.0093 Adult retinal CCTGCTTTGG (4) 3.7 0.0037 Adult retinal GTGACCGAAG (2) 3.7 0.0037 Adult retinal GTGGCCGAAA (5) 3.7 0.0037 Adult retinal AAGCAGATGA (7) 1.9 0.0019 Adult retinal TCTAAGTACG (3) 1.9 0.0019 Adult retinal TTTGTAATAT (5) 1.9 0.0019 ONL GTGACCGAAG (2) 15.3 0.0153 ONL GTGGCCGAAA (5) 3.8 0.0038 ONL GGAGAAACAG (6) 1.9 0.0019 ONL TTTGTAATAT (5) 1.9 0.0019