Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.328846	Rps2	ribosomal protein S2	X		16898
Mm.328846	Pde6a	phosphodiesterase 6A, cGMP-specific, rod, alpha	18	18 31.0 cM	225600
Gene Ontology	3',5'-cyclic-nucleotide phosphodiesterase activity | catalytic activity | hydrolase activity | signal transduction | vision
Human Homolog	PDE6A[phosphodiesterase 6A, cGMP-specific, rod, alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 112 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAGGTGACA (5) 47.3 0.0473 P8 Cb GC GCAAGGGTGA (5) 21.2 0.0212 P8 Cb GC AAGATCAAGT (4) 1.6 0.0016 P8 Cb GC CAAGGGTGAC (4) 1.6 0.0016 P8 Cb GC CTGCTGTGGC (6) 1.6 0.0016 P8 Cb GC GGCAACTTTG (8) 1.6 0.0016 Cb medulloblastoma GCAAGGGTGA (5) 20.8 0.0208 Cb medulloblastoma CAAGGTGACA (5) 11.6 0.0116 Cb medulloblastoma AAGATCAAGT (4) 4.6 0.0046 P8 GC+1d culture CAAGGTGACA (5) 45.7 0.0457 P8 GC+1d culture GCAAGGGTGA (5) 8 0.008 P8 GC+1d culture GGCAACTTTG (8) 2.3 0.0023 P8 GC+1d culture TGGCTCTGTG (7) 2.3 0.0023 P8 GC+1d culture AAGATCAAGT (4) 1.1 0.0011 P8 GC+1d culture CAAGGGTGAC (4) 1.1 0.0011 P8 GC+1d culture CCAGTGCAGA (4) 1.1 0.0011 P8 GC+1d culture TCCTTAACCA (3) 1.1 0.0011 P8 GC+SHH+1d culture CAAGGTGACA (5) 71.4 0.0714 P8 GC+SHH+1d culture GCAAGGGTGA (5) 9.4 0.0094 P8 GC+SHH+1d culture TCCTTAACCA (3) 2.3 0.0023 P8 GC+SHH+1d culture TGGCTCTGTG (7) 1.2 0.0012 P8 GC+SHH+1d culture TGGTACACAG (4) 1.2 0.0012 P8 GC+SHH+1d culture TTCAGCTTTG (8) 1.2 0.0012 3T3 fibroblasts CAAGGTGACA (5) 529.2 0.5292 3T3 fibroblasts CCAGTGCAGA (4) 14 0.014 3T3 fibroblasts CAGGTTGACA (4) 10.5 0.0105 3T3 fibroblasts TCCTTAACCA (3) 10.5 0.0105 3T3 fibroblasts GCAAGGGTGA (5) 3.5 0.0035 E15 cortex CAAGGTGACA (5) 49.5 0.0495 E15 cortex CCAGTGCAGA (4) 9.9 0.0099 E15 cortex GCAAGGGTGA (5) 9.9 0.0099 E15 cortex AAGATCAAGT (4) 4.9 0.0049 E15 cortex TCCTTAACCA (3) 4.9 0.0049 E15 cortex TGGTACACAG (4) 4.9 0.0049 P1 cortex CAAGGTGACA (5) 90.9 0.0909 P1 cortex GCAAGGGTGA (5) 13.6 0.0136 P1 cortex CAGGTTGACA (4) 4.5 0.0045 P1 cortex CTGCTGTGGC (6) 4.5 0.0045 P1 cortex TCCTTAACCA (3) 4.5 0.0045 Hypothalamus CAAGGTGACA (5) 16.3 0.0163 Hypothalamus GCAAGGGTGA (5) 7.2 0.0072 Hypothalamus AAGATCAAGT (4) 5.4 0.0054 Hypothalamus TCCTTAACCA (3) 3.6 0.0036 Hypothalamus TGGTACACAG (4) 3.6 0.0036 Hypothalamus CCAGTGCAGA (4) 1.8 0.0018 E12.5 retina CAAGGTGACA (5) 131.4 0.1314 E12.5 retina GCAAGGGTGA (5) 9.4 0.0094 E12.5 retina CAGGTTGACA (4) 5.6 0.0056 E12.5 retina CTGCTGTGGC (6) 3.8 0.0038 E12.5 retina CAAGGCGACA (2) 1.9 0.0019 E12.5 retina CCAGTGCAGA (4) 1.9 0.0019 E12.5 retina GTGGTGGCTC (4) 1.9 0.0019 E12.5 retina TGGCTCTGTG (7) 1.9 0.0019 E12.5 retina TGGTACACAG (4) 1.9 0.0019 E14.5 retina CAAGGTGACA (5) 36.4 0.0364 E14.5 retina TCCTTAACCA (3) 12.8 0.0128 E14.5 retina CCAGTGCAGA (4) 5.5 0.0055 E14.5 retina AAGATCAAGT (4) 3.6 0.0036 E14.5 retina GCAAGGGTGA (5) 3.6 0.0036 E16.5 retina CAAGGTGACA (5) 45.3 0.0453 E16.5 retina GCAAGGGTGA (5) 10.9 0.0109 E16.5 retina TCCTTAACCA (3) 3.6 0.0036 E16.5 retina AAGATCAAGT (4) 1.8 0.0018 E16.5 retina TGGCTCTGTG (7) 1.8 0.0018 E18.5 retina CAAGGTGACA (5) 27.3 0.0273 E18.5 retina TGGCTCTGTG (7) 9.1 0.0091 E18.5 retina GCAAGGGTGA (5) 5.5 0.0055 E18.5 retina GGCAACTTTG (8) 1.8 0.0018 P0.5 retina CAAGGTGACA (5) 115.8 0.1158 P0.5 retina GCAAGGGTGA (5) 11.8 0.0118 P0.5 retina TGGCTCTGTG (7) 7.9 0.0079 P0.5 retina CAAGGCGACA (2) 3.9 0.0039 P0.5 retina GGCAACTTTG (8) 3.9 0.0039 P0.5 retina CAAGGTGACC (4) 2 0.002 P2.5 retina CAAGGTGACA (5) 28.2 0.0282 P2.5 retina TGGCTCTGTG (7) 10.6 0.0106 P2.5 retina GCAAGGGTGA (5) 7 0.007 P2.5 retina CAAGGTGACC (4) 1.8 0.0018 P2.5 retina CAGGTTGACA (4) 1.8 0.0018 P2.5 retina CCAGTGCAGA (4) 1.8 0.0018 P4.5 retina CAAGGTGACA (5) 17.8 0.0178 P4.5 retina TGGCTCTGTG (7) 11.9 0.0119 P4.5 retina GCAAGGGTGA (5) 7.9 0.0079 P4.5 retina CAAGGGTGAC (4) 2 0.002 P4.5 retina TTCAGCTTTG (8) 2 0.002 P6.5 retina CAAGGTGACA (5) 43.4 0.0434 P6.5 retina GCAAGGGTGA (5) 6.7 0.0067 P6.5 retina TGGCTCTGTG (7) 6.7 0.0067 P6.5 retina GTGGTGGCTC (4) 1.7 0.0017 P6.5 retina TGGTACACAG (4) 1.7 0.0017 P10.5 crx- retina CAAGGTGACA (5) 37.2 0.0372 P10.5 crx- retina GCAAGGGTGA (5) 29.7 0.0297 P10.5 crx- retina AAGATCAAGT (4) 1.9 0.0019 P10.5 crx- retina CTGCTGTGGC (6) 1.9 0.0019 P10.5 crx+ retina CAAGGTGACA (5) 30.8 0.0308 P10.5 crx+ retina GCAAGGGTGA (5) 19.2 0.0192 P10.5 crx+ retina CAGGTTGACA (4) 1.9 0.0019 P10.5 crx+ retina GTGGTGGCTC (4) 1.9 0.0019 P10.5 crx+ retina TGGCTCTGTG (7) 1.9 0.0019 Adult retinal CAAGGTGACA (5) 37 0.037 Adult retinal GCAAGGGTGA (5) 7.4 0.0074 Adult retinal CAGGTTGACA (4) 3.7 0.0037 Adult retinal GGCAACTTTG (8) 3.7 0.0037 Adult retinal TGGCTCTGTG (7) 3.7 0.0037 Adult retinal CAAGGTGACC (4) 1.9 0.0019 ONL CAAGGTGACA (5) 9.6 0.0096 ONL TGGTACACAG (4) 7.7 0.0077 ONL CCAGTGCAGA (4) 3.8 0.0038 ONL GCAAGGGTGA (5) 3.8 0.0038 ONL TCCTTAACCA (3) 3.8 0.0038 ONL TGGCTCTGTG (7) 3.8 0.0038 ONL TTCAGCTTTG (8) 3.8 0.0038