Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.33206
1300013D05Rik
RIKEN cDNA 1300013D05 gene
11
67480
Mm.33206
2810474C18Rik
RIKEN cDNA 2810474C18 gene
11
72785
Mm.33206
R75228
expressed sequence R75228
11
97772
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 89 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
CGCCACCACG
(
19
)
3.3
0.0033
P8 Cb GC
GCAGCAAGAA (
6
)
1.6
0.0016
P8 Cb GC
GCCAGCAAAA
(
8
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
CGCCACCACG
(
19
)
6.9
0.0069
Cb medulloblastoma
GGCAGTTTAT
(
4
)
4.6
0.0046
Cb medulloblastoma
GCCAGCAAAA
(
8
)
2.3
0.0023
Cb medulloblastoma
TGTGCACACA (
12
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
CAGCGCTACG (
4
)
2.3
0.0023
P8 GC+1d culture
CGCCACCACG
(
19
)
2.3
0.0023
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
CGCCACCACG
(
19
)
9.4
0.0094
P8 GC+SHH+1d culture
CAGCGCTACG (
4
)
2.3
0.0023
P8 GC+SHH+1d culture
GCAGCAAGAA (
6
)
1.2
0.0012
P8 GC+SHH+1d culture
GGCAGTTTAT
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TGGCAGCTGG (
9
)
1.2
0.0012
P8 GC+SHH+1d culture
TGTGCACACA (
12
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
GCAGCAAGAA (
6
)
7
0.007
3T3 fibroblasts
GCCAGCAAAA
(
8
)
7
0.007
3T3 fibroblasts
TGTGCACACA (
12
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
CAGCGCTACG (
4
)
14.8
0.0148
E15 cortex
CCCTTTAATC (
5
)
9.9
0.0099
E15 cortex
CGCCACCACG
(
19
)
9.9
0.0099
E15 cortex
GCAGCAAGAA (
6
)
4.9
0.0049
E15 cortex
GCCAGCAAAA
(
8
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
TGGCAGCTGG (
9
)
9.1
0.0091
P1 cortex
CGCCACCACG
(
19
)
4.5
0.0045
P1 cortex
GCAGCAAGAA (
6
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
CGCCACCACG
(
19
)
9.1
0.0091
Hypothalamus
CAGCGCTACG (
4
)
3.6
0.0036
Hypothalamus
GCAGCAAGAA (
6
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
CGCCACCACG
(
19
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
TGTGCACACA (
12
)
3.6
0.0036
E14.5 retina
CAGCGCTACG (
4
)
1.8
0.0018
E14.5 retina
CGCCACCACG
(
19
)
1.8
0.0018
E14.5 retina
GCAGCAAGAA (
6
)
1.8
0.0018
E14.5 retina
GGCAGTTTAT
(
4
)
1.8
0.0018
E14.5 retina
TGGCAGCTGG (
9
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
CGCCACCACG
(
19
)
9.1
0.0091
E16.5 retina
GCAGCAAGAA (
6
)
3.6
0.0036
E16.5 retina
TGTGCACACA (
12
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
GCAGCAAGAA (
6
)
3.6
0.0036
E18.5 retina
CGCCACCACG
(
19
)
1.8
0.0018
E18.5 retina
GGCAGTTTAT
(
4
)
1.8
0.0018
E18.5 retina
TGTGCACACA (
12
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
GCAGCAAGAA (
6
)
5.9
0.0059
P0.5 retina
TGTGCACACA (
12
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
CGCCACCACG
(
19
)
8.8
0.0088
P2.5 retina
CCCTTTAATC (
5
)
1.8
0.0018
P2.5 retina
GCAGCAAGAA (
6
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
CGCCACCACG
(
19
)
7.9
0.0079
P4.5 retina
GCAGCAAGAA (
6
)
2
0.002
P4.5 retina
TGTGCACACA (
12
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
GCAGCAAGAA (
6
)
6.7
0.0067
P6.5 retina
CGCCACCACG
(
19
)
5
0.005
P6.5 retina
GCCAGCAAAA
(
8
)
1.7
0.0017
P6.5 retina
GGCAGTTTAT
(
4
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
CGCCACCACG
(
19
)
7.4
0.0074
P10.5 crx- retina
TGTGCACACA (
12
)
3.7
0.0037
P10.5 crx- retina
GCAGCAAGAA (
6
)
1.9
0.0019
P10.5 crx- retina
GGCAGTTTAT
(
4
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
CGCCACCACG
(
19
)
3.8
0.0038
P10.5 crx+ retina
GCAGCAAGAA (
6
)
1.9
0.0019
P10.5 crx+ retina
GGCAGTTTAT
(
4
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
CGCCACCACG
(
19
)
24.1
0.0241
Adult retinal
GCAGCAAGAA (
6
)
5.6
0.0056
Adult retinal
TGTGCACACA (
12
)
3.7
0.0037
Adult retinal
GGCAGTTTAT
(
4
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
CGCCACCACG
(
19
)
15.3
0.0153
ONL
GGCAGTTTAT
(
4
)
1.9
0.0019
ONL
TGTGCACACA (
12
)
1.9
0.0019
