Mouse Retina SAGE Library
[
Home
] [
Libraries
] [
Images
]
Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.332840
Ptcd1
pentatricopeptide repeat domain 1
5
71799
Human Homolog
PTCD1[pentatricopeptide repeat domain 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 91 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TCTACAAGAA (
5
)
63.6
0.0636
P8 Cb GC
AGCTGTACAG
(
3
)
11.4
0.0114
P8 Cb GC
CGCGAGGCAT (
4
)
1.6
0.0016
P8 Cb GC
TGACTGTCTG (
2
)
1.6
0.0016
Cb medulloblastoma
TCTACAAGAA (
5
)
18.5
0.0185
Cb medulloblastoma
AGCTGTACAG
(
3
)
9.2
0.0092
Cb medulloblastoma
ATGGTTTAAT (
2
)
4.6
0.0046
Cb medulloblastoma
CTTCCCCCCC
(
3
)
4.6
0.0046
Cb medulloblastoma
GGCCCCTGGT (
2
)
2.3
0.0023
Cb medulloblastoma
TGACTGTCTG (
2
)
2.3
0.0023
P8 GC+1d culture
TCTACAAGAA (
5
)
119.9
0.1199
P8 GC+1d culture
AGCTGTACAG
(
3
)
14.8
0.0148
P8 GC+1d culture
CGCGAGGCAT (
4
)
3.4
0.0034
P8 GC+1d culture
TGACTGTCTG (
2
)
2.3
0.0023
P8 GC+1d culture
CTTCCCCCCC
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
TCTACAAGAA (
5
)
125.3
0.1253
P8 GC+SHH+1d culture
AGCTGTACAG
(
3
)
23.4
0.0234
P8 GC+SHH+1d culture
CGCGAGGCAT (
4
)
3.5
0.0035
P8 GC+SHH+1d culture
GGCCCCTGGT (
2
)
3.5
0.0035
P8 GC+SHH+1d culture
TGACTGTCTG (
2
)
2.3
0.0023
P8 GC+SHH+1d culture
CTTCCCCCCC
(
3
)
1.2
0.0012
3T3 fibroblasts
AGCTGTACAG
(
3
)
49.1
0.0491
3T3 fibroblasts
CGCGAGGCAT (
4
)
3.5
0.0035
3T3 fibroblasts
CTTCCCCCCC
(
3
)
3.5
0.0035
3T3 fibroblasts
TCTACAAGAA (
5
)
3.5
0.0035
3T3 fibroblasts
TGACTGTCTG (
2
)
3.5
0.0035
E15 cortex
TCTACAAGAA (
5
)
39.6
0.0396
E15 cortex
CTTCCCCCCC
(
3
)
9.9
0.0099
E15 cortex
AGCTGTACAG
(
3
)
4.9
0.0049
E15 cortex
GGCCCCTGGT (
2
)
4.9
0.0049
P1 cortex
TCTACAAGAA (
5
)
72.7
0.0727
P1 cortex
AGCTGTACAG
(
3
)
4.5
0.0045
P1 cortex
CTTCCCCCCC
(
3
)
4.5
0.0045
P1 cortex
TGACTGTCTG (
2
)
4.5
0.0045
Hypothalamus
TCTACAAGAA (
5
)
38
0.038
Hypothalamus
AGCTGTACAG
(
3
)
14.5
0.0145
Hypothalamus
CTTCCCCCCC
(
3
)
3.6
0.0036
Hypothalamus
TGACTGTCTG (
2
)
3.6
0.0036
Hypothalamus
ATGGTTTAAT (
2
)
1.8
0.0018
E12.5 retina
TCTACAAGAA (
5
)
125.8
0.1258
E12.5 retina
AGCTGTACAG
(
3
)
22.5
0.0225
E12.5 retina
CGCGAGGCAT (
4
)
3.8
0.0038
E12.5 retina
GGCCCCTGGT (
2
)
1.9
0.0019
E14.5 retina
TCTACAAGAA (
5
)
51
0.051
E14.5 retina
AGCTGTACAG
(
3
)
23.7
0.0237
E14.5 retina
CGCGAGGCAT (
4
)
7.3
0.0073
E16.5 retina
TCTACAAGAA (
5
)
63.4
0.0634
E16.5 retina
AGCTGTACAG
(
3
)
16.3
0.0163
E16.5 retina
CTTCCCCCCC
(
3
)
5.4
0.0054
E16.5 retina
CGCGAGGCAT (
4
)
3.6
0.0036
E16.5 retina
TGACTGTCTG (
2
)
1.8
0.0018
E18.5 retina
TCTACAAGAA (
5
)
32.7
0.0327
E18.5 retina
AGCTGTACAG
(
3
)
14.6
0.0146
E18.5 retina
CGCGAGGCAT (
4
)
1.8
0.0018
E18.5 retina
CTTCCCCCCC
(
3
)
1.8
0.0018
E18.5 retina
GGCCCCTGGT (
2
)
1.8
0.0018
E18.5 retina
TGACTGTCTG (
2
)
1.8
0.0018
E18.5 retina
TGGAAGCACT
(
7
)
1.8
0.0018
P0.5 retina
TCTACAAGAA (
5
)
51
0.051
P0.5 retina
TGACTGTCTG (
2
)
15.7
0.0157
P0.5 retina
AGCTGTACAG
(
3
)
13.7
0.0137
P0.5 retina
GGCCCCTGGT (
2
)
3.9
0.0039
P2.5 retina
TCTACAAGAA (
5
)
38.7
0.0387
P2.5 retina
AGCTGTACAG
(
3
)
33.4
0.0334
P2.5 retina
TGACTGTCTG (
2
)
8.8
0.0088
P2.5 retina
GGCCCCTGGT (
2
)
1.8
0.0018
P4.5 retina
TCTACAAGAA (
5
)
25.8
0.0258
P4.5 retina
AGCTGTACAG
(
3
)
13.9
0.0139
P4.5 retina
TGACTGTCTG (
2
)
2
0.002
P4.5 retina
TGGAAGCACT
(
7
)
2
0.002
P6.5 retina
TCTACAAGAA (
5
)
38.3
0.0383
P6.5 retina
AGCTGTACAG
(
3
)
13.3
0.0133
P6.5 retina
TGACTGTCTG (
2
)
6.7
0.0067
P6.5 retina
GGCCCCTGGT (
2
)
1.7
0.0017
P6.5 retina
TGGAAGCACT
(
7
)
1.7
0.0017
P10.5 crx- retina
TCTACAAGAA (
5
)
27.9
0.0279
P10.5 crx- retina
AGCTGTACAG
(
3
)
18.6
0.0186
P10.5 crx- retina
TGACTGTCTG (
2
)
16.7
0.0167
P10.5 crx- retina
GGCCCCTGGT (
2
)
1.9
0.0019
P10.5 crx+ retina
TCTACAAGAA (
5
)
25
0.025
P10.5 crx+ retina
AGCTGTACAG
(
3
)
19.2
0.0192
P10.5 crx+ retina
TGACTGTCTG (
2
)
9.6
0.0096
P10.5 crx+ retina
TGGAAGCACT
(
7
)
1.9
0.0019
Adult retinal
TGACTGTCTG (
2
)
22.2
0.0222
Adult retinal
AGCTGTACAG
(
3
)
13
0.013
Adult retinal
TCTACAAGAA (
5
)
9.3
0.0093
Adult retinal
CTTCCCCCCC
(
3
)
5.6
0.0056
Adult retinal
CGCGAGGCAT (
4
)
1.9
0.0019
ONL
AGCTGTACAG
(
3
)
13.4
0.0134
ONL
TCTACAAGAA (
5
)
7.7
0.0077
ONL
TGACTGTCTG (
2
)
3.8
0.0038
