Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.333388	Chd4	chromodomain helicase DNA binding protein 4	6	6 58.4 cM	107932
Gene Ontology	ATP binding | ATP dependent helicase activity | chromatin | chromatin assembly/disassembly | chromatin binding | chromatin modification | DNA binding | helicase activity | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent
Human Homolog	CHD4[chromodomain helicase DNA binding protein 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 137 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAGCAGGAC (4) 174.6 0.1746 P8 Cb GC ATGGCTCACA (25) 11.4 0.0114 P8 Cb GC CCCGAACTGG 9.8 0.0098 P8 Cb GC TGCAGGAGCT (3) 8.2 0.0082 P8 Cb GC GGCCCCGCCC (6) 4.9 0.0049 P8 Cb GC CGTCAGGAGG 3.3 0.0033 P8 Cb GC CTTGGCTGCA 3.3 0.0033 P8 Cb GC AATGAATATT (2) 1.6 0.0016 P8 Cb GC TCTTACTGGC (3) 1.6 0.0016 P8 Cb GC TGGAAATGAA (2) 1.6 0.0016 Cb medulloblastoma GAAGCAGGAC (4) 106.4 0.1064 Cb medulloblastoma ATGGCTCACA (25) 20.8 0.0208 Cb medulloblastoma GGCCCCGCCC (6) 2.3 0.0023 P8 GC+1d culture GAAGCAGGAC (4) 189.5 0.1895 P8 GC+1d culture ATGGCTCACA (25) 33.1 0.0331 P8 GC+1d culture TGCAGGAGCT (3) 16 0.016 P8 GC+1d culture GGCCCCGCCC (6) 5.7 0.0057 P8 GC+1d culture GCGGGCGGGC (5) 2.3 0.0023 P8 GC+1d culture CCCGAACTGG 1.1 0.0011 P8 GC+1d culture GGAACAGAGA (5) 1.1 0.0011 P8 GC+1d culture TCTTACTGGC (3) 1.1 0.0011 P8 GC+SHH+1d culture GAAGCAGGAC (4) 159.2 0.1592 P8 GC+SHH+1d culture ATGGCTCACA (25) 25.8 0.0258 P8 GC+SHH+1d culture TGCAGGAGCT (3) 21.1 0.0211 P8 GC+SHH+1d culture GGCCCCGCCC (6) 10.5 0.0105 P8 GC+SHH+1d culture GCGGGCGGGC (5) 3.5 0.0035 P8 GC+SHH+1d culture TCTTACTGGC (3) 3.5 0.0035 P8 GC+SHH+1d culture TGGAAATGAA (2) 2.3 0.0023 P8 GC+SHH+1d culture CCCGAACTGG 1.2 0.0012 3T3 fibroblasts GAAGCAGGAC (4) 115.7 0.1157 3T3 fibroblasts ATGGCTCACA (25) 31.5 0.0315 3T3 fibroblasts TGCAGGAGCT (3) 17.5 0.0175 3T3 fibroblasts CCCGAACTGG 10.5 0.0105 3T3 fibroblasts GTGACAGCTA (3) 10.5 0.0105 3T3 fibroblasts CACCTGCACA (5) 7 0.007 3T3 fibroblasts GCGGGCGGGC (5) 3.5 0.0035 3T3 fibroblasts GGCCCCGCCC (6) 3.5 0.0035 E15 cortex GAAGCAGGAC (4) 217.7 0.2177 E15 cortex ATGGCTCACA (25) 29.7 0.0297 E15 cortex GGCCCCGCCC (6) 29.7 0.0297 E15 cortex CCCGAACTGG 19.8 0.0198 E15 cortex AATGAATATT (2) 9.9 0.0099 E15 cortex CCCTTCTTTC (3) 9.9 0.0099 E15 cortex GTGACAGCTA (3) 9.9 0.0099 E15 cortex TGCAGGAGCT (3) 9.9 0.0099 E15 cortex CTGGGGGCTC (6) 4.9 0.0049 P1 cortex GAAGCAGGAC (4) 181.8 0.1818 P1 cortex ATGGCTCACA (25) 13.6 0.0136 P1 cortex TGCAGGAGCT (3) 9.1 0.0091 P1 cortex AATGAATATT (2) 4.5 0.0045 P1 cortex CTGGGGGCTC (6) 4.5 0.0045 Hypothalamus GAAGCAGGAC (4) 182.9 0.1829 Hypothalamus ATGGCTCACA (25) 43.5 0.0435 Hypothalamus TGCAGGAGCT (3) 3.6 0.0036 Hypothalamus CTGGGGGCTC (6) 1.8 0.0018 Hypothalamus GCGGGCGGGC (5) 1.8 0.0018 Hypothalamus GGCCCCGCCC (6) 1.8 0.0018 E12.5 retina GAAGCAGGAC (4) 240.3 0.2403 E12.5 retina ATGGCTCACA (25) 48.8 0.0488 E12.5 retina TGCAGGAGCT (3) 9.4 0.0094 E12.5 retina CCCGAACTGG 1.9 0.0019 E12.5 retina GGCCCCGCCC (6) 1.9 0.0019 E12.5 retina TCTTACTGGC (3) 1.9 0.0019 E14.5 retina GAAGCAGGAC (4) 174.9 0.1749 E14.5 retina ATGGCTCACA (25) 47.4 0.0474 E14.5 retina TGCAGGAGCT (3) 5.5 0.0055 E14.5 retina CCCGAACTGG 3.6 0.0036 E14.5 retina GCGGGCGGGC (5) 1.8 0.0018 E14.5 retina GGAACAGAGA (5) 1.8 0.0018 E16.5 retina GAAGCAGGAC (4) 148.5 0.1485 E16.5 retina ATGGCTCACA (25) 58 0.058 E16.5 retina TGCAGGAGCT (3) 16.3 0.0163 E16.5 retina GCGGGCGGGC (5) 9.1 0.0091 E16.5 retina TTTATTGATT (4) 5.4 0.0054 E16.5 retina CACCTGCACA (5) 3.6 0.0036 E16.5 retina CTTGGCTGCA 1.8 0.0018 E16.5 retina GGCCCCGCCC (6) 1.8 0.0018 E18.5 retina GAAGCAGGAC (4) 209.2 0.2092 E18.5 retina ATGGCTCACA (25) 38.2 0.0382 E18.5 retina TGCAGGAGCT (3) 3.6 0.0036 E18.5 retina CCCGAACTGG 1.8 0.0018 E18.5 retina CTTGGCTGCA 1.8 0.0018 E18.5 retina GCGGGCGGGC (5) 1.8 0.0018 E18.5 retina GGCCCCGCCC (6) 1.8 0.0018 P0.5 retina GAAGCAGGAC (4) 135.4 0.1354 P0.5 retina ATGGCTCACA (25) 35.3 0.0353 P0.5 retina TGCAGGAGCT (3) 17.7 0.0177 P0.5 retina GGAACAGAGA (5) 2 0.002 P0.5 retina GGCCCCGCCC (6) 2 0.002 P2.5 retina GAAGCAGGAC (4) 200.6 0.2006 P2.5 retina ATGGCTCACA (25) 31.7 0.0317 P2.5 retina TGCAGGAGCT (3) 7 0.007 P2.5 retina CCCGAACTGG 3.5 0.0035 P2.5 retina CTGGGGGCTC (6) 3.5 0.0035 P2.5 retina CTTGGCTGCA 1.8 0.0018 P2.5 retina GCGGGCGGGC (5) 1.8 0.0018 P2.5 retina GGCCCCGCCC (6) 1.8 0.0018 P2.5 retina TCTTACTGGC (3) 1.8 0.0018 P2.5 retina TTTATTGATT (4) 1.8 0.0018 P4.5 retina GAAGCAGGAC (4) 247.7 0.2477 P4.5 retina ATGGCTCACA (25) 23.8 0.0238 P4.5 retina TGCAGGAGCT (3) 5.9 0.0059 P4.5 retina CCCGAACTGG 4 0.004 P4.5 retina GCGGGCGGGC (5) 4 0.004 P4.5 retina CTTGGCTGCA 2 0.002 P4.5 retina GGCCCCGCCC (6) 2 0.002 P4.5 retina GTGACAGCTA (3) 2 0.002 P6.5 retina GAAGCAGGAC (4) 158.4 0.1584 P6.5 retina ATGGCTCACA (25) 55 0.055 P6.5 retina TGCAGGAGCT (3) 8.3 0.0083 P6.5 retina CTGGGGGCTC (6) 1.7 0.0017 P6.5 retina CTTGGCTGCA 1.7 0.0017 P6.5 retina GGAACAGAGA (5) 1.7 0.0017 P6.5 retina TGGAAATGAA (2) 1.7 0.0017 P10.5 crx- retina ATGGCTCACA (25) 44.6 0.0446 P10.5 crx- retina GAAGCAGGAC (4) 44.6 0.0446 P10.5 crx- retina TGCAGGAGCT (3) 13 0.013 P10.5 crx- retina GCGGGCGGGC (5) 7.4 0.0074 P10.5 crx- retina TCTTACTGGC (3) 3.7 0.0037 P10.5 crx- retina CGTCAGGAGG 1.9 0.0019 P10.5 crx- retina CTTGGCTGCA 1.9 0.0019 P10.5 crx- retina GGCCCCGCCC (6) 1.9 0.0019 P10.5 crx+ retina GAAGCAGGAC (4) 155.7 0.1557 P10.5 crx+ retina ATGGCTCACA (25) 44.2 0.0442 P10.5 crx+ retina TGCAGGAGCT (3) 5.8 0.0058 P10.5 crx+ retina GGCCCCGCCC (6) 3.8 0.0038 P10.5 crx+ retina TCTTACTGGC (3) 1.9 0.0019 P10.5 crx+ retina TTTATTGATT (4) 1.9 0.0019 Adult retinal GAAGCAGGAC (4) 53.7 0.0537 Adult retinal ATGGCTCACA (25) 33.3 0.0333 Adult retinal TGCAGGAGCT (3) 11.1 0.0111 Adult retinal CCCTTCTTTC (3) 1.9 0.0019 Adult retinal TCTTACTGGC (3) 1.9 0.0019 ONL ATGGCTCACA (25) 49.8 0.0498 ONL GAAGCAGGAC (4) 26.8 0.0268 ONL TGCAGGAGCT (3) 3.8 0.0038 ONL TCTTACTGGC (3) 1.9 0.0019