Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.333594
5430402M21Rik
RIKEN cDNA 5430402M21 gene
7
71337
Mm.333594
BC057627
cDNA sequence BC057627
7
330474
Human Homolog
C19orf7[chromosome 19 open reading frame 7]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 8 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 57 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTCTCTTA
(
3
)
8.2
0.0082
P8 Cb GC
ATATGGAATA (
6
)
3.3
0.0033
P8 Cb GC
TCATCTGTAG (
3
)
1.6
0.0016
Cb medulloblastoma
TGGTCTCTTA
(
3
)
2.3
0.0023
P8 GC+1d culture
TGGTCTCTTA
(
3
)
9.1
0.0091
P8 GC+1d culture
ATATGGAATA (
6
)
4.6
0.0046
P8 GC+1d culture
AGGGTCTTCG
(
2
)
2.3
0.0023
P8 GC+1d culture
CAGGCTCACT (
3
)
1.1
0.0011
P8 GC+1d culture
GGTCTCAGCC (
5
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTCTCTTA
(
3
)
12.9
0.0129
P8 GC+SHH+1d culture
ATATGGAATA (
6
)
4.7
0.0047
P8 GC+SHH+1d culture
AGGGTCTTCG
(
2
)
1.2
0.0012
3T3 fibroblasts
GGTCTCAGCC (
5
)
7
0.007
3T3 fibroblasts
AGGGTCTTCG
(
2
)
3.5
0.0035
E15 cortex
GGTCTCAGCC (
5
)
14.8
0.0148
E15 cortex
ATATGGAATA (
6
)
4.9
0.0049
E15 cortex
TGGTCTCTTA
(
3
)
4.9
0.0049
P1 cortex
TGGTCTCTTA
(
3
)
9.1
0.0091
P1 cortex
TCATCTGTAG (
3
)
4.5
0.0045
Hypothalamus
ATATGGAATA (
6
)
5.4
0.0054
Hypothalamus
GGTCTCAGCC (
5
)
5.4
0.0054
E12.5 retina
TGGTCTCTTA
(
3
)
9.4
0.0094
E12.5 retina
ATATGGAATA (
6
)
5.6
0.0056
E12.5 retina
AGGGTCTTCG
(
2
)
1.9
0.0019
E14.5 retina
ATATGGAATA (
6
)
5.5
0.0055
E14.5 retina
CAGGCTCACT (
3
)
1.8
0.0018
E14.5 retina
TGGTCTCTTA
(
3
)
1.8
0.0018
E16.5 retina
GGTCTCAGCC (
5
)
5.4
0.0054
E16.5 retina
ATATGGAATA (
6
)
3.6
0.0036
E16.5 retina
TGGTCTCTTA
(
3
)
3.6
0.0036
E16.5 retina
CAGGCTCACT (
3
)
1.8
0.0018
E18.5 retina
ATATGGAATA (
6
)
9.1
0.0091
E18.5 retina
TGGTCTCTTA
(
3
)
3.6
0.0036
P0.5 retina
TGGTCTCTTA
(
3
)
5.9
0.0059
P0.5 retina
AGGGTCTTCG
(
2
)
2
0.002
P0.5 retina
ATATGGAATA (
6
)
2
0.002
P2.5 retina
TGGTCTCTTA
(
3
)
14.1
0.0141
P2.5 retina
ATATGGAATA (
6
)
10.6
0.0106
P2.5 retina
AGGGTCTTCG
(
2
)
3.5
0.0035
P4.5 retina
TGGTCTCTTA
(
3
)
9.9
0.0099
P4.5 retina
ATATGGAATA (
6
)
4
0.004
P4.5 retina
GGTCTCAGCC (
5
)
2
0.002
P6.5 retina
ATATGGAATA (
6
)
10
0.01
P6.5 retina
TGGTCTCTTA
(
3
)
10
0.01
P10.5 crx- retina
ATATGGAATA (
6
)
7.4
0.0074
P10.5 crx- retina
CAGGCTCACT (
3
)
1.9
0.0019
P10.5 crx- retina
GGTCTCAGCC (
5
)
1.9
0.0019
P10.5 crx+ retina
TGGTCTCTTA
(
3
)
5.8
0.0058
P10.5 crx+ retina
ATATGGAATA (
6
)
3.8
0.0038
P10.5 crx+ retina
GGTCTCAGCC (
5
)
1.9
0.0019
P10.5 crx+ retina
TCATCTGTAG (
3
)
1.9
0.0019
Adult retinal
ATATGGAATA (
6
)
3.7
0.0037
Adult retinal
AGGGTCTTCG
(
2
)
1.9
0.0019
Adult retinal
GGTCTCAGCC (
5
)
1.9
0.0019
Adult retinal
TGGTCTCTTA
(
3
)
1.9
0.0019
ONL
TGGTCTCTTA
(
3
)
11.5
0.0115
ONL
ATATGGAATA (
6
)
1.9
0.0019
