Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.334284
B930086L07Rik
RIKEN cDNA B930086L07 gene
7
320030
Mm.334284
D930021H04Rik
RIKEN cDNA D930021H04 gene
7
399575
Mm.334284
T25625
expressed sequence T25625
7
97432
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 117 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
TGTGCAAACA (
5
)
11.4
0.0114
P8 Cb GC
CGCCACCACC (
12
)
6.5
0.0065
P8 Cb GC
GCTCTACCAG
(
3
)
3.3
0.0033
P8 Cb GC
TTCTATTCAT
(
6
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
AAAGGAAAAA (
15
)
6.9
0.0069
Cb medulloblastoma
CGCCACCACC (
12
)
6.9
0.0069
Cb medulloblastoma
GAACAGTGTG (
8
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TTCTATTCAT
(
6
)
4.6
0.0046
P8 GC+1d culture
CGCCACCACC (
12
)
2.3
0.0023
P8 GC+1d culture
TGTGCAAACA (
5
)
2.3
0.0023
P8 GC+1d culture
GAACAGTGTG (
8
)
1.1
0.0011
P8 GC+1d culture
GCTCTACCAG
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
GAACAGTGTG (
8
)
9.4
0.0094
P8 GC+SHH+1d culture
CGCCACCACC (
12
)
5.9
0.0059
P8 GC+SHH+1d culture
TGTGCAAACA (
5
)
4.7
0.0047
P8 GC+SHH+1d culture
GCTCTACCAG
(
3
)
3.5
0.0035
P8 GC+SHH+1d culture
AAAGGAAAAA (
15
)
1.2
0.0012
P8 GC+SHH+1d culture
GGGAGTGAGG
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TTCTATTCAT
(
6
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
TGTGCAAACA (
5
)
17.5
0.0175
3T3 fibroblasts
CGCCACCACC (
12
)
7
0.007
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
CGCCACCACC (
12
)
14.8
0.0148
E15 cortex
GCTCTACCAG
(
3
)
9.9
0.0099
E15 cortex
AAAGGAAAAA (
15
)
4.9
0.0049
E15 cortex
TGTGCAAACA (
5
)
4.9
0.0049
E15 cortex
TTCTATTCAT
(
6
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
GCTCTACCAG
(
3
)
9.1
0.0091
P1 cortex
CGCCACCACC (
12
)
4.5
0.0045
P1 cortex
TTCTATTCAT
(
6
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
CGCCACCACC (
12
)
3.6
0.0036
Hypothalamus
AAAGGAAAAA (
15
)
1.8
0.0018
Hypothalamus
AGGAAGGAAG (
12
)
1.8
0.0018
Hypothalamus
AGGGAGGGGC (
6
)
1.8
0.0018
Hypothalamus
GAACAGTGTG (
8
)
1.8
0.0018
Hypothalamus
GCAGCACATA (
3
)
1.8
0.0018
Hypothalamus
TGTGCAAACA (
5
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
GAACAGTGTG (
8
)
5.6
0.0056
E12.5 retina
TTCTATTCAT
(
6
)
3.8
0.0038
E12.5 retina
CGCCACCACC (
12
)
1.9
0.0019
E12.5 retina
TGTGCAAACA (
5
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
AGGGAGGGGC (
6
)
3.6
0.0036
E14.5 retina
CGCCACCACC (
12
)
3.6
0.0036
E14.5 retina
TTCTATTCAT
(
6
)
3.6
0.0036
E14.5 retina
GAACAGTGTG (
8
)
1.8
0.0018
E14.5 retina
GCGGCCCTCC (
5
)
1.8
0.0018
E14.5 retina
GGGAGTGAGG
(
4
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
GAACAGTGTG (
8
)
7.2
0.0072
E16.5 retina
CGCCACCACC (
12
)
3.6
0.0036
E16.5 retina
TGTGCAAACA (
5
)
3.6
0.0036
E16.5 retina
TTCTATTCAT
(
6
)
3.6
0.0036
E16.5 retina
AAAGGAAAAA (
15
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
CGCCACCACC (
12
)
10.9
0.0109
E18.5 retina
AAAGGAAAAA (
15
)
3.6
0.0036
E18.5 retina
GAACAGTGTG (
8
)
3.6
0.0036
E18.5 retina
GCTCTACCAG
(
3
)
1.8
0.0018
E18.5 retina
TTCTATTCAT
(
6
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
GCTCTACCAG
(
3
)
7.9
0.0079
P0.5 retina
CGCCACCACC (
12
)
5.9
0.0059
P0.5 retina
GAACAGTGTG (
8
)
3.9
0.0039
P0.5 retina
TGTGCAAACA (
5
)
3.9
0.0039
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
CGCCACCACC (
12
)
10.6
0.0106
P2.5 retina
GCTCTACCAG
(
3
)
7
0.007
P2.5 retina
GAACAGTGTG (
8
)
3.5
0.0035
P2.5 retina
TTCTATTCAT
(
6
)
3.5
0.0035
P2.5 retina
AAGATAAGCA (
5
)
1.8
0.0018
P2.5 retina
TGTGCAAACA (
5
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
CGCCACCACC (
12
)
7.9
0.0079
P4.5 retina
TTCTATTCAT
(
6
)
5.9
0.0059
P4.5 retina
AAAGGAAAAA (
15
)
4
0.004
P4.5 retina
GCTCTACCAG
(
3
)
4
0.004
P4.5 retina
AAGATAAGCA (
5
)
2
0.002
P4.5 retina
AGGAAGGAAG (
12
)
2
0.002
P4.5 retina
GAACAGTGTG (
8
)
2
0.002
P4.5 retina
TGTGCAAACA (
5
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
GCTCTACCAG
(
3
)
18.3
0.0183
P6.5 retina
CGCCACCACC (
12
)
8.3
0.0083
P6.5 retina
TTCTATTCAT
(
6
)
6.7
0.0067
P6.5 retina
TGTGCAAACA (
5
)
3.3
0.0033
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
TTCTATTCAT
(
6
)
9.3
0.0093
P10.5 crx- retina
CGCCACCACC (
12
)
1.9
0.0019
P10.5 crx- retina
GAACAGTGTG (
8
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TTCTATTCAT
(
6
)
5.8
0.0058
P10.5 crx+ retina
GCTCTACCAG
(
3
)
3.8
0.0038
P10.5 crx+ retina
AAAGGAAAAA (
15
)
1.9
0.0019
P10.5 crx+ retina
AGGAAGGAAG (
12
)
1.9
0.0019
P10.5 crx+ retina
GAACAGTGTG (
8
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GCTCTACCAG
(
3
)
16.7
0.0167
Adult retinal
CGCCACCACC (
12
)
9.3
0.0093
Adult retinal
GAACAGTGTG (
8
)
1.9
0.0019
Adult retinal
GCGGCCCTCC (
5
)
1.9
0.0019
Adult retinal
TTCTATTCAT
(
6
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
AAGATAAGCA (
5
)
3.8
0.0038
ONL
GCAGCACATA (
3
)
3.8
0.0038
ONL
CGCCACCACC (
12
)
1.9
0.0019
ONL
GAACAGTGTG (
8
)
1.9
0.0019
ONL
GCGGCCCTCC (
5
)
1.9
0.0019
ONL
GCTCTACCAG
(
3
)
1.9
0.0019
