Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3350	D830031N03Rik	RIKEN cDNA D830031N03 gene			442834
Mm.3350	Macf1	microtubule-actin crosslinking factor 1	4	4 57.4 cM	11426
Gene Ontology	actin binding | actin cytoskeleton | calcium ion binding | cell cycle arrest | cell motility | cytoskeleton | establishment and/or maintenance of cell polarity | microtubule binding | microtubule cytoskeleton
Human Homolog	MACF1[microtubule-actin crosslinking factor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 146 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTGCTGTGT (4) 22.8 0.0228 P8 Cb GC ATGTTAAAAA (6) 11.4 0.0114 P8 Cb GC GGAGCCATTG (3) 11.4 0.0114 P8 Cb GC GAAAACAAAA (8) 9.8 0.0098 P8 Cb GC TGGTGCAGGG (2) 6.5 0.0065 P8 Cb GC TTGCTGTGTG (5) 4.9 0.0049 Cb medulloblastoma ATGTTAAAAA (6) 25.4 0.0254 Cb medulloblastoma GGAGCCATTG (3) 25.4 0.0254 Cb medulloblastoma GAAAACAAAA (8) 11.6 0.0116 Cb medulloblastoma TTGCTGTGTG (5) 6.9 0.0069 Cb medulloblastoma GTCAGAGCTG (5) 4.6 0.0046 Cb medulloblastoma TGGTGCAGGG (2) 4.6 0.0046 Cb medulloblastoma CTTTCTTCTC (5) 2.3 0.0023 P8 GC+1d culture GGAGCCATTG (3) 17.1 0.0171 P8 GC+1d culture ATGTTAAAAA (6) 14.8 0.0148 P8 GC+1d culture TTTGCTGTGT (4) 10.3 0.0103 P8 GC+1d culture TTGCTGTGTG (5) 6.8 0.0068 P8 GC+1d culture GAAAACAAAA (8) 5.7 0.0057 P8 GC+1d culture CTTTCTTCTC (5) 1.1 0.0011 P8 GC+1d culture GTCAGAGCTG (5) 1.1 0.0011 P8 GC+1d culture TAAAATATAT (5) 1.1 0.0011 P8 GC+1d culture TGCCCGTCCC (4) 1.1 0.0011 P8 GC+SHH+1d culture ATGTTAAAAA (6) 31.6 0.0316 P8 GC+SHH+1d culture GGAGCCATTG (3) 19.9 0.0199 P8 GC+SHH+1d culture TTGCTGTGTG (5) 10.5 0.0105 P8 GC+SHH+1d culture TTTGCTGTGT (4) 9.4 0.0094 P8 GC+SHH+1d culture GAAAACAAAA (8) 7 0.007 P8 GC+SHH+1d culture TGGTGCAGGG (2) 2.3 0.0023 P8 GC+SHH+1d culture TTCTAAAAAA (5) 2.3 0.0023 P8 GC+SHH+1d culture GTCAGAGCTG (5) 1.2 0.0012 3T3 fibroblasts GGAGCCATTG (3) 56.1 0.0561 3T3 fibroblasts ATATAGCAAA (2) 3.5 0.0035 3T3 fibroblasts TTGCTGTGTG (5) 3.5 0.0035 3T3 fibroblasts TTTGCTGTGT (4) 3.5 0.0035 E15 cortex GGAGCCATTG (3) 9.9 0.0099 E15 cortex GTCAGAGCTG (5) 4.9 0.0049 E15 cortex TGGTGCAGGG (2) 4.9 0.0049 E15 cortex TTGCTGTGTG (5) 4.9 0.0049 P1 cortex GGAGCCATTG (3) 18.2 0.0182 P1 cortex ATGTTAAAAA (6) 4.5 0.0045 P1 cortex TTGCTGTGTG (5) 4.5 0.0045 P1 cortex TTTGCTGTGT (4) 4.5 0.0045 Hypothalamus GGAGCCATTG (3) 43.5 0.0435 Hypothalamus GAAAACAAAA (8) 9.1 0.0091 Hypothalamus TTTGCTGTGT (4) 5.4 0.0054 Hypothalamus ATATAGCAAA (2) 3.6 0.0036 Hypothalamus ATGTTAAAAA (6) 3.6 0.0036 Hypothalamus GTCAGAGCTG (5) 1.8 0.0018 Hypothalamus TGCCCGTCCC (4) 1.8 0.0018 Hypothalamus TGGTGCAGGG (2) 1.8 0.0018 Hypothalamus TTGCTGTGTG (5) 1.8 0.0018 E12.5 retina GGAGCCATTG (3) 18.8 0.0188 E12.5 retina ATGTTAAAAA (6) 13.1 0.0131 E12.5 retina TGGTGCAGGG (2) 5.6 0.0056 E12.5 retina GTCAGAGCTG (5) 3.8 0.0038 E12.5 retina TTGCTGTGTG (5) 3.8 0.0038 E12.5 retina ATATAGCAAA (2) 1.9 0.0019 E12.5 retina CTTTCTTCTC (5) 1.9 0.0019 E12.5 retina TTTGCTGTGT (4) 1.9 0.0019 E14.5 retina GGAGCCATTG (3) 14.6 0.0146 E14.5 retina GAAAACAAAA (8) 9.1 0.0091 E14.5 retina TTGCTGTGTG (5) 7.3 0.0073 E14.5 retina ATGTTAAAAA (6) 5.5 0.0055 E14.5 retina ATATAGCAAA (2) 3.6 0.0036 E14.5 retina TGGTGCAGGG (2) 3.6 0.0036 E14.5 retina TTTGCTGTGT (4) 3.6 0.0036 E14.5 retina GTCAGAGCTG (5) 1.8 0.0018 E16.5 retina ATGTTAAAAA (6) 10.9 0.0109 E16.5 retina TTGCTGTGTG (5) 10.9 0.0109 E16.5 retina GGAGCCATTG (3) 9.1 0.0091 E16.5 retina GTCAGAGCTG (5) 3.6 0.0036 E16.5 retina TGGTGCAGGG (2) 3.6 0.0036 E16.5 retina TTTGCTGTGT (4) 3.6 0.0036 E16.5 retina GAAAACAAAA (8) 1.8 0.0018 E18.5 retina ATGTTAAAAA (6) 60 0.06 E18.5 retina GAAAACAAAA (8) 10.9 0.0109 E18.5 retina GGAGCCATTG (3) 10.9 0.0109 E18.5 retina TTTGCTGTGT (4) 5.5 0.0055 E18.5 retina GTCAGAGCTG (5) 3.6 0.0036 E18.5 retina TTGCTGTGTG (5) 3.6 0.0036 E18.5 retina TTCTAAAAAA (5) 1.8 0.0018 P0.5 retina ATGTTAAAAA (6) 15.7 0.0157 P0.5 retina GGAGCCATTG (3) 13.7 0.0137 P0.5 retina CTTTCTTCTC (5) 9.8 0.0098 P0.5 retina TTTGCTGTGT (4) 9.8 0.0098 P0.5 retina GAAAACAAAA (8) 5.9 0.0059 P0.5 retina TGGTGCAGGG (2) 3.9 0.0039 P0.5 retina GTCAGAGCTG (5) 2 0.002 P0.5 retina TTCTAAAAAA (5) 2 0.002 P0.5 retina TTGCTGTGTG (5) 2 0.002 P2.5 retina GGAGCCATTG (3) 22.9 0.0229 P2.5 retina ATGTTAAAAA (6) 21.1 0.0211 P2.5 retina GAAAACAAAA (8) 17.6 0.0176 P2.5 retina TTTGCTGTGT (4) 10.6 0.0106 P2.5 retina TTGCTGTGTG (5) 8.8 0.0088 P2.5 retina TGGTGCAGGG (2) 5.3 0.0053 P2.5 retina ATATAGCAAA (2) 1.8 0.0018 P2.5 retina GTCAGAGCTG (5) 1.8 0.0018 P2.5 retina TGCCCGTCCC (4) 1.8 0.0018 P2.5 retina TTCTAAAAAA (5) 1.8 0.0018 P4.5 retina GGAGCCATTG (3) 23.8 0.0238 P4.5 retina ATGTTAAAAA (6) 13.9 0.0139 P4.5 retina GAAAACAAAA (8) 11.9 0.0119 P4.5 retina TTGCTGTGTG (5) 11.9 0.0119 P4.5 retina TTTGCTGTGT (4) 9.9 0.0099 P4.5 retina TGCCCGTCCC (4) 5.9 0.0059 P4.5 retina GTCAGAGCTG (5) 4 0.004 P4.5 retina TGGTGCAGGG (2) 4 0.004 P6.5 retina GGAGCCATTG (3) 26.7 0.0267 P6.5 retina TTGCTGTGTG (5) 26.7 0.0267 P6.5 retina ATGTTAAAAA (6) 13.3 0.0133 P6.5 retina TGCCCGTCCC (4) 11.7 0.0117 P6.5 retina TGGTGCAGGG (2) 8.3 0.0083 P6.5 retina GAAAACAAAA (8) 5 0.005 P6.5 retina TTTGCTGTGT (4) 5 0.005 P10.5 crx- retina GGAGCCATTG (3) 31.6 0.0316 P10.5 crx- retina TTTGCTGTGT (4) 20.4 0.0204 P10.5 crx- retina TTGCTGTGTG (5) 18.6 0.0186 P10.5 crx- retina TGGTGCAGGG (2) 13 0.013 P10.5 crx- retina GTCAGAGCTG (5) 5.6 0.0056 P10.5 crx- retina GAAAACAAAA (8) 3.7 0.0037 P10.5 crx- retina TAAAATATAT (5) 1.9 0.0019 P10.5 crx+ retina GGAGCCATTG (3) 44.2 0.0442 P10.5 crx+ retina ATGTTAAAAA (6) 11.5 0.0115 P10.5 crx+ retina TGGTGCAGGG (2) 9.6 0.0096 P10.5 crx+ retina GAAAACAAAA (8) 7.7 0.0077 P10.5 crx+ retina TTGCTGTGTG (5) 5.8 0.0058 P10.5 crx+ retina TTTGCTGTGT (4) 5.8 0.0058 P10.5 crx+ retina GTCAGAGCTG (5) 3.8 0.0038 P10.5 crx+ retina ATATAGCAAA (2) 1.9 0.0019 P10.5 crx+ retina TGCCCGTCCC (4) 1.9 0.0019 Adult retinal GGAGCCATTG (3) 18.5 0.0185 Adult retinal TTGCTGTGTG (5) 18.5 0.0185 Adult retinal TGCCCGTCCC (4) 16.7 0.0167 Adult retinal TGGTGCAGGG (2) 7.4 0.0074 Adult retinal GTCAGAGCTG (5) 3.7 0.0037 Adult retinal TTTGCTGTGT (4) 3.7 0.0037 Adult retinal ATGTTAAAAA (6) 1.9 0.0019 ONL GGAGCCATTG (3) 24.9 0.0249 ONL ATGTTAAAAA (6) 5.7 0.0057 ONL TAAAATATAT (5) 3.8 0.0038 ONL TTGCTGTGTG (5) 3.8 0.0038 ONL CTTTCTTCTC (5) 1.9 0.0019 ONL GAAAACAAAA (8) 1.9 0.0019 ONL GTCAGAGCTG (5) 1.9 0.0019 ONL TGCCCGTCCC (4) 1.9 0.0019