Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.341608
1700051E09Rik
RIKEN cDNA 1700051E09 gene
11
11 B5
67338
Human Homolog
RFFL[likely ortholog of mouse Rififylin]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 7 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 46 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCCAGGCAAA (
4
)
1.6
0.0016
P8 Cb GC
GGGGCTCACA
(
10
)
1.6
0.0016
Cb medulloblastoma
CCCAGGCAAA (
4
)
4.6
0.0046
Cb medulloblastoma
TCAAACAACT
(
2
)
2.3
0.0023
P8 GC+1d culture
CCCAGGCAAA (
4
)
3.4
0.0034
P8 GC+1d culture
GGGGCTCACA
(
10
)
2.3
0.0023
P8 GC+SHH+1d culture
CCCAGGCAAA (
4
)
10.5
0.0105
3T3 fibroblasts
CCCAGGCAAA (
4
)
3.5
0.0035
E15 cortex
GGGGCTCACA
(
10
)
54.4
0.0544
P1 cortex
GGGGCTCACA
(
10
)
13.6
0.0136
P1 cortex
CCCAGGCAAA (
4
)
4.5
0.0045
Hypothalamus
GGGGCTCACA
(
10
)
36.2
0.0362
Hypothalamus
CCCAGGCAAA (
4
)
1.8
0.0018
E12.5 retina
GGGGCTCACA
(
10
)
35.7
0.0357
E12.5 retina
CCCAGGCAAA (
4
)
3.8
0.0038
E12.5 retina
TCAAACAACT
(
2
)
1.9
0.0019
E14.5 retina
GGGGCTCACA
(
10
)
54.7
0.0547
E14.5 retina
CCCAGGCAAA (
4
)
5.5
0.0055
E16.5 retina
GGGGCTCACA
(
10
)
36.2
0.0362
E16.5 retina
CCCAGGCAAA (
4
)
3.6
0.0036
E16.5 retina
TCAAACAACT
(
2
)
1.8
0.0018
E18.5 retina
GGGGCTCACA
(
10
)
72.8
0.0728
E18.5 retina
CCCAGGCAAA (
4
)
5.5
0.0055
E18.5 retina
TCAAACAACT
(
2
)
1.8
0.0018
E18.5 retina
TGGGCATCCT
(
2
)
1.8
0.0018
P0.5 retina
GGGGCTCACA
(
10
)
37.3
0.0373
P2.5 retina
GGGGCTCACA
(
10
)
65.1
0.0651
P2.5 retina
CCCAGGCAAA (
4
)
5.3
0.0053
P2.5 retina
TGGGCATCCT
(
2
)
1.8
0.0018
P4.5 retina
GGGGCTCACA
(
10
)
27.7
0.0277
P4.5 retina
CCCAGGCAAA (
4
)
5.9
0.0059
P6.5 retina
GGGGCTCACA
(
10
)
43.4
0.0434
P6.5 retina
CCCAGGCAAA (
4
)
13.3
0.0133
P6.5 retina
TCAAACAACT
(
2
)
1.7
0.0017
P6.5 retina
TGGGCATCCT
(
2
)
1.7
0.0017
P10.5 crx- retina
GGGGCTCACA
(
10
)
24.2
0.0242
P10.5 crx- retina
CCCAGGCAAA (
4
)
1.9
0.0019
P10.5 crx- retina
TCAAACAACT
(
2
)
1.9
0.0019
P10.5 crx- retina
TGGGCATCCT
(
2
)
1.9
0.0019
P10.5 crx+ retina
GGGGCTCACA
(
10
)
17.3
0.0173
P10.5 crx+ retina
CCCAGGCAAA (
4
)
7.7
0.0077
Adult retinal
GGGGCTCACA
(
10
)
31.5
0.0315
Adult retinal
CCCAGGCAAA (
4
)
7.4
0.0074
ONL
GGGGCTCACA
(
10
)
38.3
0.0383
ONL
TCAAACAACT
(
2
)
7.7
0.0077
ONL
CCCAGGCAAA (
4
)
1.9
0.0019
