Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.341886	1110067M05Rik	RIKEN cDNA 1110067M05 gene	11		68851
Mm.341886	Thrap1	thyroid hormone receptor associated protein 1	11		327987
Mm.341886	2700033K15Rik	RIKEN cDNA 2700033K15 gene	11		72594
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 179 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGATCAGTC (5) 357.3 0.3573 P8 Cb GC TAAAAAAGAA (6) 13.1 0.0131 P8 Cb GC AATAATTTAT (6) 4.9 0.0049 P8 Cb GC ATTTCAAAGC (5) 3.3 0.0033 P8 Cb GC CTTACATCCG (3) 3.3 0.0033 P8 Cb GC GAAGAAAATG (9) 3.3 0.0033 P8 Cb GC AAGCCAAAAA (5) 1.6 0.0016 P8 Cb GC AAGCCTTAAA (5) 1.6 0.0016 P8 Cb GC ACAAACAATT (3) 1.6 0.0016 P8 Cb GC GAGGTGATGC (3) 1.6 0.0016 P8 Cb GC GGTCTGAGGA (4) 1.6 0.0016 Cb medulloblastoma TGGATCAGTC (5) 210.4 0.2104 Cb medulloblastoma ATTTCAAAGC (5) 11.6 0.0116 Cb medulloblastoma AAGCCTTCAA (3) 9.2 0.0092 Cb medulloblastoma TGGTTTGAAG (6) 6.9 0.0069 Cb medulloblastoma GAAGAAAATG (9) 4.6 0.0046 Cb medulloblastoma AAGCAAAAAA (14) 2.3 0.0023 Cb medulloblastoma AAGCCTTAAA (5) 2.3 0.0023 Cb medulloblastoma AATAATTTAT (6) 2.3 0.0023 Cb medulloblastoma TTAAAAAGAA (11) 2.3 0.0023 P8 GC+1d culture TGGATCAGTC (5) 253.4 0.2534 P8 GC+1d culture GAAGAAAATG (9) 6.8 0.0068 P8 GC+1d culture TAAAAAAGAA (6) 6.8 0.0068 P8 GC+1d culture AAGCCTTCAA (3) 3.4 0.0034 P8 GC+1d culture GGTCTGAGGA (4) 3.4 0.0034 P8 GC+1d culture AAGCAAAAAA (14) 2.3 0.0023 P8 GC+1d culture AAGCCTTAAA (5) 2.3 0.0023 P8 GC+1d culture AATAATTTAT (6) 2.3 0.0023 P8 GC+1d culture ATTTCAAAGC (5) 2.3 0.0023 P8 GC+1d culture ACAAACAATT (3) 1.1 0.0011 P8 GC+1d culture CATTTAATCC (9) 1.1 0.0011 P8 GC+1d culture CTTTAATATT (5) 1.1 0.0011 P8 GC+1d culture GCAGGAAGAG (3) 1.1 0.0011 P8 GC+1d culture TTAAAAAGAA (11) 1.1 0.0011 P8 GC+1d culture TTCAGTAATG (8) 1.1 0.0011 P8 GC+1d culture TTGAAAAGAA (4) 1.1 0.0011 P8 GC+SHH+1d culture TGGATCAGTC (5) 303.3 0.3033 P8 GC+SHH+1d culture TAAAAAAGAA (6) 12.9 0.0129 P8 GC+SHH+1d culture GAAGAAAATG (9) 4.7 0.0047 P8 GC+SHH+1d culture ATTTCAAAGC (5) 3.5 0.0035 P8 GC+SHH+1d culture AAGCCTTCAA (3) 2.3 0.0023 P8 GC+SHH+1d culture TGGTTTGAAG (6) 1.2 0.0012 P8 GC+SHH+1d culture TTAAAAAGAA (11) 1.2 0.0012 P8 GC+SHH+1d culture TTCAGTAATG (8) 1.2 0.0012 3T3 fibroblasts TGGATCAGTC (5) 112.2 0.1122 3T3 fibroblasts GGTCTGAGGA (4) 7 0.007 3T3 fibroblasts AAGCCTTCAA (3) 3.5 0.0035 3T3 fibroblasts CTTACATCCG (3) 3.5 0.0035 3T3 fibroblasts TAAAAAAGAA (6) 3.5 0.0035 E15 cortex TGGATCAGTC (5) 64.3 0.0643 E15 cortex GGTCTGAGGA (4) 9.9 0.0099 E15 cortex CTTACATCCG (3) 4.9 0.0049 E15 cortex GAAGAAAATG (9) 4.9 0.0049 P1 cortex TGGATCAGTC (5) 81.8 0.0818 P1 cortex ATTTCAAAGC (5) 9.1 0.0091 P1 cortex TAAAAAAGAA (6) 9.1 0.0091 P1 cortex AAAACACTAA (9) 4.5 0.0045 P1 cortex GAAGAAAATG (9) 4.5 0.0045 P1 cortex TTCAGTAATG (8) 4.5 0.0045 Hypothalamus TGGATCAGTC (5) 211.9 0.2119 Hypothalamus GGTCTGAGGA (4) 3.6 0.0036 Hypothalamus TAAAAAAGAA (6) 3.6 0.0036 Hypothalamus AATAATTTAT (6) 1.8 0.0018 E12.5 retina TGGATCAGTC (5) 484.4 0.4844 E12.5 retina ATTTCAAAGC (5) 9.4 0.0094 E12.5 retina TGGTTTGAAG (6) 7.5 0.0075 E12.5 retina GGTCTGAGGA (4) 3.8 0.0038 E12.5 retina AAGCCTTAAA (5) 1.9 0.0019 E12.5 retina CATTTAATCC (9) 1.9 0.0019 E12.5 retina CTTTAATATT (5) 1.9 0.0019 E12.5 retina GAAGAAAATG (9) 1.9 0.0019 E12.5 retina GAGGTGATGC (3) 1.9 0.0019 E12.5 retina TAAAAAAGAA (6) 1.9 0.0019 E12.5 retina TTCAGTAATG (8) 1.9 0.0019 E14.5 retina TGGATCAGTC (5) 317 0.317 E14.5 retina ATTTCAAAGC (5) 10.9 0.0109 E14.5 retina AATAATTTAT (6) 5.5 0.0055 E14.5 retina GAAGAAAATG (9) 5.5 0.0055 E14.5 retina AAGCCTTAAA (5) 3.6 0.0036 E14.5 retina TTGAAAAGAA (4) 3.6 0.0036 E14.5 retina AAGCAAAAAA (14) 1.8 0.0018 E14.5 retina AAGCCTTCAA (3) 1.8 0.0018 E14.5 retina TAAAAAAGAA (6) 1.8 0.0018 E14.5 retina TGGTTTGAAG (6) 1.8 0.0018 E14.5 retina TTCAGTAATG (8) 1.8 0.0018 E16.5 retina TGGATCAGTC (5) 391.2 0.3912 E16.5 retina ATTTCAAAGC (5) 21.7 0.0217 E16.5 retina AAGCCTTCAA (3) 3.6 0.0036 E16.5 retina GAAGAAAATG (9) 3.6 0.0036 E16.5 retina CATTTAATCC (9) 1.8 0.0018 E16.5 retina CTTTAATATT (5) 1.8 0.0018 E16.5 retina TAAAAAAGAA (6) 1.8 0.0018 E16.5 retina TGGTTTGAAG (6) 1.8 0.0018 E16.5 retina TTGAAAAGAA (4) 1.8 0.0018 E18.5 retina TGGATCAGTC (5) 443.8 0.4438 E18.5 retina ATTTCAAAGC (5) 10.9 0.0109 E18.5 retina GAAGAAAATG (9) 10.9 0.0109 E18.5 retina AAGCCTTCAA (3) 7.3 0.0073 E18.5 retina AAGCAAAAAA (14) 5.5 0.0055 E18.5 retina AATAATTTAT (6) 5.5 0.0055 E18.5 retina AAGCCTTAAA (5) 3.6 0.0036 E18.5 retina AAGCCAAAAA (5) 1.8 0.0018 E18.5 retina CTTTAATATT (5) 1.8 0.0018 E18.5 retina TGGTTTGAAG (6) 1.8 0.0018 P0.5 retina TGGATCAGTC (5) 196.3 0.1963 P0.5 retina TTCAGTAATG (8) 5.9 0.0059 P0.5 retina ATTTCAAAGC (5) 3.9 0.0039 P0.5 retina AAGCCTTCAA (3) 2 0.002 P0.5 retina AATAATTTAT (6) 2 0.002 P0.5 retina TAAAAAAGAA (6) 2 0.002 P2.5 retina TGGATCAGTC (5) 220 0.22 P2.5 retina ATTTCAAAGC (5) 19.4 0.0194 P2.5 retina GAAGAAAATG (9) 12.3 0.0123 P2.5 retina GGTCTGAGGA (4) 7 0.007 P2.5 retina AAGCCTTCAA (3) 5.3 0.0053 P2.5 retina AAGCAAAAAA (14) 3.5 0.0035 P2.5 retina AAGCCTTAAA (5) 3.5 0.0035 P2.5 retina TTCAGTAATG (8) 3.5 0.0035 P2.5 retina AAGCCAAAAA (5) 1.8 0.0018 P2.5 retina AATAATTTAT (6) 1.8 0.0018 P2.5 retina CTTTAATATT (5) 1.8 0.0018 P2.5 retina TGGTTTGAAG (6) 1.8 0.0018 P4.5 retina TGGATCAGTC (5) 212 0.212 P4.5 retina GAAGAAAATG (9) 9.9 0.0099 P4.5 retina TAAAAAAGAA (6) 5.9 0.0059 P4.5 retina AAGCCTTAAA (5) 4 0.004 P4.5 retina AAGCCTTCAA (3) 4 0.004 P4.5 retina ATTTCAAAGC (5) 4 0.004 P4.5 retina GGTCTGAGGA (4) 4 0.004 P4.5 retina TTCAGTAATG (8) 4 0.004 P4.5 retina AAAACACTAA (9) 2 0.002 P4.5 retina AATAATTTAT (6) 2 0.002 P4.5 retina GCAGGAAGAG (3) 2 0.002 P4.5 retina TGGTTTGAAG (6) 2 0.002 P4.5 retina TTGAAAAGAA (4) 2 0.002 P6.5 retina TGGATCAGTC (5) 201.7 0.2017 P6.5 retina ATTTCAAAGC (5) 8.3 0.0083 P6.5 retina TGGTTTGAAG (6) 6.7 0.0067 P6.5 retina GAAGAAAATG (9) 5 0.005 P6.5 retina GGTCTGAGGA (4) 5 0.005 P6.5 retina TTCAGTAATG (8) 3.3 0.0033 P6.5 retina AAGCCAAAAA (5) 1.7 0.0017 P6.5 retina AAGCCTTAAA (5) 1.7 0.0017 P6.5 retina AAGCCTTCAA (3) 1.7 0.0017 P6.5 retina AATAATTTAT (6) 1.7 0.0017 P6.5 retina TTGAAAAGAA (4) 1.7 0.0017 P10.5 crx- retina TGGATCAGTC (5) 156.1 0.1561 P10.5 crx- retina GAAGAAAATG (9) 26 0.026 P10.5 crx- retina ATTTCAAAGC (5) 16.7 0.0167 P10.5 crx- retina AAGCCTTAAA (5) 3.7 0.0037 P10.5 crx- retina AATAATTTAT (6) 3.7 0.0037 P10.5 crx- retina TTCAGTAATG (8) 3.7 0.0037 P10.5 crx- retina ACAAACAATT (3) 1.9 0.0019 P10.5 crx- retina CTTTAATATT (5) 1.9 0.0019 P10.5 crx- retina TGGTTTGAAG (6) 1.9 0.0019 P10.5 crx+ retina TGGATCAGTC (5) 198 0.198 P10.5 crx+ retina GAAGAAAATG (9) 11.5 0.0115 P10.5 crx+ retina ATTTCAAAGC (5) 9.6 0.0096 P10.5 crx+ retina TTCAGTAATG (8) 7.7 0.0077 P10.5 crx+ retina TGGTTTGAAG (6) 5.8 0.0058 P10.5 crx+ retina AAGCCTTAAA (5) 1.9 0.0019 P10.5 crx+ retina AAGCCTTCAA (3) 1.9 0.0019 Adult retinal TGGATCAGTC (5) 77.8 0.0778 Adult retinal GAAGAAAATG (9) 7.4 0.0074 Adult retinal ATTTCAAAGC (5) 5.6 0.0056 Adult retinal AAAACACTAA (9) 1.9 0.0019 Adult retinal AAGCCTTCAA (3) 1.9 0.0019 Adult retinal GCAGGAAGAG (3) 1.9 0.0019 Adult retinal GGTCTGAGGA (4) 1.9 0.0019 ONL TGGATCAGTC (5) 63.2 0.0632 ONL GAAGAAAATG (9) 19.2 0.0192 ONL AAGCCTTCAA (3) 9.6 0.0096 ONL AAGCCAAAAA (5) 5.7 0.0057 ONL GAGGTGATGC (3) 5.7 0.0057 ONL AAGCCTTAAA (5) 3.8 0.0038 ONL ATTTCAAAGC (5) 3.8 0.0038 ONL TGGTTTGAAG (6) 3.8 0.0038 ONL AAAACACTAA (9) 1.9 0.0019 ONL GGTCTGAGGA (4) 1.9 0.0019