Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.342177	Igh-6	immunoglobulin heavy chain 6 (heavy chain of IgM)	12	12 58.0 cM	16019
Mm.342177	Igh-VJ558	immunoglobulin heavy chain (J558 family)	12	12 59.0 cM	16061
Human Homolog	MGC27165[hypothetical protein MGC27165]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTTGGCTTC (3) 22.8 0.0228 P8 Cb GC TAAAATGTGG (6) 1.6 0.0016 P8 Cb GC TACTACTGTA (4) 1.6 0.0016 P8 Cb GC TCTTCCCCTC (7) 1.6 0.0016 Cb medulloblastoma TACTACTGTA (4) 6.9 0.0069 Cb medulloblastoma GGCTGCCTGG (14) 2.3 0.0023 Cb medulloblastoma TATTACTGTA (6) 2.3 0.0023 Cb medulloblastoma TCTTCCCCTC (7) 2.3 0.0023 P8 GC+1d culture TCTTGGCTTC (3) 67.4 0.0674 P8 GC+1d culture TAAAATGTGG (6) 2.3 0.0023 P8 GC+1d culture TATTACTGTA (6) 2.3 0.0023 P8 GC+1d culture GAAAGACCCT (4) 1.1 0.0011 P8 GC+1d culture GAAATAAATA (8) 1.1 0.0011 P8 GC+1d culture GACTCTAACC (8) 1.1 0.0011 P8 GC+1d culture GGCTGCCTGG (14) 1.1 0.0011 P8 GC+1d culture GTGCCTGGTT (8) 1.1 0.0011 P8 GC+1d culture TCTTCCCCTC (7) 1.1 0.0011 P8 GC+SHH+1d culture TCTTGGCTTC (3) 43.3 0.0433 P8 GC+SHH+1d culture CTGACTGTGA (7) 2.3 0.0023 P8 GC+SHH+1d culture GAAATAAATA (8) 2.3 0.0023 P8 GC+SHH+1d culture TATTACTGTA (6) 2.3 0.0023 P8 GC+SHH+1d culture GAAAGACCCT (4) 1.2 0.0012 P8 GC+SHH+1d culture GGGTACATTA (3) 1.2 0.0012 P8 GC+SHH+1d culture GTGCCTGGTT (8) 1.2 0.0012 P8 GC+SHH+1d culture TAAAATGTGG (6) 1.2 0.0012 P8 GC+SHH+1d culture TACTACTGTA (4) 1.2 0.0012 P8 GC+SHH+1d culture TGCCCATCCC (6) 1.2 0.0012 3T3 fibroblasts CAGCTCAGTA (6) 7 0.007 3T3 fibroblasts CTGACTGTGA (7) 3.5 0.0035 3T3 fibroblasts GAAAGACCCT (4) 3.5 0.0035 E15 cortex GACCTCAGCA (10) 9.9 0.0099 E15 cortex GGCTGCCTGG (14) 4.9 0.0049 E15 cortex TCTTCCCCTC (7) 4.9 0.0049 P1 cortex TACTACTGTA (4) 9.1 0.0091 P1 cortex TCTTGGCTTC (3) 9.1 0.0091 P1 cortex GAAAGACCCT (4) 4.5 0.0045 P1 cortex TATTACTGTA (6) 4.5 0.0045 Hypothalamus TCTCCCCCTC (6) 3.6 0.0036 Hypothalamus CAGCTCAGTA (6) 1.8 0.0018 Hypothalamus GACCTCAGCA (10) 1.8 0.0018 Hypothalamus GGCTGCCTGG (14) 1.8 0.0018 Hypothalamus GTGCCTGGTT (8) 1.8 0.0018 Hypothalamus TACTACTGTA (4) 1.8 0.0018 Hypothalamus TATTACTGTA (6) 1.8 0.0018 Hypothalamus TCTTCCCCTC (7) 1.8 0.0018 Hypothalamus TCTTGGCTTC (3) 1.8 0.0018 E12.5 retina AGCCAGCAGT (8) 1.9 0.0019 E12.5 retina CTGACTGTGA (7) 1.9 0.0019 E12.5 retina TAAAATGTGG (6) 1.9 0.0019 E12.5 retina TCTTGGCTTC (3) 1.9 0.0019 E14.5 retina TATTACTGTA (6) 3.6 0.0036 E14.5 retina TCTTGGCTTC (3) 3.6 0.0036 E14.5 retina TGCCCATCCC (6) 1.8 0.0018 E16.5 retina TCTTCCCCTC (7) 12.7 0.0127 E16.5 retina TCTTGGCTTC (3) 5.4 0.0054 E16.5 retina GAAAGACCCT (4) 3.6 0.0036 E16.5 retina TGCCCATCCC (6) 3.6 0.0036 E16.5 retina CTGACTGTGA (7) 1.8 0.0018 E18.5 retina GAAATAAATA (8) 3.6 0.0036 E18.5 retina GACTCTAACC (8) 1.8 0.0018 E18.5 retina TACTACTGTA (4) 1.8 0.0018 E18.5 retina TCTTGGCTTC (3) 1.8 0.0018 P0.5 retina GGCTGCCTGG (14) 3.9 0.0039 P0.5 retina TCTTGGCTTC (3) 3.9 0.0039 P0.5 retina GACTCTAACC (8) 2 0.002 P0.5 retina TATTACTGTA (6) 2 0.002 P2.5 retina TCTTGGCTTC (3) 17.6 0.0176 P2.5 retina AGCCAGCAGT (8) 3.5 0.0035 P2.5 retina TATTACTGTA (6) 3.5 0.0035 P2.5 retina TACTACTGTA (4) 1.8 0.0018 P4.5 retina TCTTGGCTTC (3) 19.8 0.0198 P4.5 retina GAAAGACCCT (4) 4 0.004 P4.5 retina CTGACTGTGA (7) 2 0.002 P4.5 retina GACTCTAACC (8) 2 0.002 P4.5 retina GGGTACATTA (3) 2 0.002 P4.5 retina TACTACTGTA (4) 2 0.002 P4.5 retina TATTACTGTA (6) 2 0.002 P6.5 retina TCTTGGCTTC (3) 33.3 0.0333 P6.5 retina TAAAATGTGG (6) 3.3 0.0033 P6.5 retina TACTACTGTA (4) 3.3 0.0033 P6.5 retina CTGACTGTGA (7) 1.7 0.0017 P6.5 retina TATTACTGTA (6) 1.7 0.0017 P10.5 crx- retina TCTTGGCTTC (3) 22.3 0.0223 P10.5 crx- retina TATTACTGTA (6) 3.7 0.0037 P10.5 crx- retina GACTCTAACC (8) 1.9 0.0019 P10.5 crx- retina GGGTACATTA (3) 1.9 0.0019 P10.5 crx- retina TAAAATGTGG (6) 1.9 0.0019 P10.5 crx- retina TGCCCATCCC (6) 1.9 0.0019 P10.5 crx+ retina TCTTGGCTTC (3) 13.5 0.0135 P10.5 crx+ retina GACTCTAACC (8) 1.9 0.0019 P10.5 crx+ retina GGCTGCCTGG (14) 1.9 0.0019 P10.5 crx+ retina GGGTACATTA (3) 1.9 0.0019 P10.5 crx+ retina TACTACTGTA (4) 1.9 0.0019 P10.5 crx+ retina TATTACTGTA (6) 1.9 0.0019 P10.5 crx+ retina TCTCCCCCTC (6) 1.9 0.0019 Adult retinal AGCCAGCAGT (8) 5.6 0.0056 Adult retinal TCTTGGCTTC (3) 5.6 0.0056 Adult retinal TCTTCCCCTC (7) 1.9 0.0019 ONL TATTACTGTA (6) 3.8 0.0038 ONL AGCCAGCAGT (8) 1.9 0.0019 ONL GAAAGACCCT (4) 1.9 0.0019 ONL GGATACATAA (4) 1.9 0.0019 ONL GGCTGCCTGG (14) 1.9 0.0019 ONL GGGTACATTA (3) 1.9 0.0019 ONL TCTTGGCTTC (3) 1.9 0.0019