Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.344671	Sap18	Sin3-associated polypeptide 18	14	14 28.5 cM	20220
Gene Ontology	chromatin modification | histone deacetylase complex | molecular_function unknown | regulation of transcription, DNA-dependent | transcription factor complex
Human Homolog	SAP18[sin3-associated polypeptide, 18kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTTCAATCA 17.9 0.0179 P8 Cb GC ACCCTGCAGT (4) 8.2 0.0082 P8 Cb GC GCAGTTCACA (4) 4.9 0.0049 P8 Cb GC TACAGTGACT (5) 3.3 0.0033 Cb medulloblastoma GCAGTTCACA (4) 11.6 0.0116 Cb medulloblastoma TGTTCAATCA 11.6 0.0116 Cb medulloblastoma ACCCTGCAGT (4) 9.2 0.0092 Cb medulloblastoma TACAGTGACT (5) 2.3 0.0023 Cb medulloblastoma TGTGCTTCTA (2) 2.3 0.0023 Cb medulloblastoma TGTTCATCAA (2) 2.3 0.0023 P8 GC+1d culture GCAGTTCACA (4) 8 0.008 P8 GC+1d culture TGTTCAATCA 8 0.008 P8 GC+1d culture ACCCTGCAGT (4) 5.7 0.0057 P8 GC+1d culture ACCCTGCTGT 1.1 0.0011 P8 GC+SHH+1d culture TGTTCAATCA 16.4 0.0164 P8 GC+SHH+1d culture ACCCTGCAGT (4) 10.5 0.0105 P8 GC+SHH+1d culture GCAGTTCACA (4) 4.7 0.0047 P8 GC+SHH+1d culture TACAGTGACT (5) 2.3 0.0023 3T3 fibroblasts ACCCTGCAGT (4) 28 0.028 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts TACAGTGACT (5) 10.5 0.0105 3T3 fibroblasts TGTTCAATCA 7 0.007 3T3 fibroblasts GTGCTGCCAA (5) 3.5 0.0035 E15 cortex ACCCTGCTGT 14.8 0.0148 E15 cortex GCAGTTCACA (4) 14.8 0.0148 E15 cortex ACCCTGCAGT (4) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGTGCTTCTA (2) 4.9 0.0049 P1 cortex ACCCTGCTGT 9.1 0.0091 P1 cortex TGTTCAATCA 9.1 0.0091 P1 cortex ACCCTGCAGT (4) 4.5 0.0045 P1 cortex GCAGTTCACA (4) 4.5 0.0045 P1 cortex TACAGTGACT (5) 4.5 0.0045 Hypothalamus TGTTCAATCA 16.3 0.0163 Hypothalamus ACCCTGCTGT 14.5 0.0145 Hypothalamus GCAGTTCACA (4) 5.4 0.0054 Hypothalamus ACCCTGCAGT (4) 3.6 0.0036 Hypothalamus GTGCCTGCCA (4) 3.6 0.0036 Hypothalamus TACAGTGACT (5) 3.6 0.0036 Hypothalamus TATTTCACAA 3.6 0.0036 E12.5 retina TGTTCAATCA 15 0.015 E12.5 retina ACCCTGCAGT (4) 3.8 0.0038 E12.5 retina GCAGTTCACA (4) 3.8 0.0038 E12.5 retina ACCCTGCTGT 1.9 0.0019 E12.5 retina CCTGGCTTTG (9) 1.9 0.0019 E14.5 retina TGTTCAATCA 14.6 0.0146 E14.5 retina GCAGTTCACA (4) 5.5 0.0055 E14.5 retina CCTGGCTTTG (9) 3.6 0.0036 E14.5 retina ACCCTGCAGT (4) 1.8 0.0018 E14.5 retina ACCCTGCTGT 1.8 0.0018 E14.5 retina GTGCTGCCAA (5) 1.8 0.0018 E14.5 retina TGTGCTTCTA (2) 1.8 0.0018 E16.5 retina TGTTCAATCA 12.7 0.0127 E16.5 retina GCAGTTCACA (4) 5.4 0.0054 E16.5 retina ACCCTGCAGT (4) 3.6 0.0036 E16.5 retina CCTGGCTTTG (9) 3.6 0.0036 E16.5 retina ACCCTGCTGT 1.8 0.0018 E16.5 retina TATTTCACAA 1.8 0.0018 E18.5 retina TGTTCAATCA 43.7 0.0437 E18.5 retina GCAGTTCACA (4) 5.5 0.0055 E18.5 retina ACCCTGCAGT (4) 1.8 0.0018 E18.5 retina CCTGGCTTTG (9) 1.8 0.0018 E18.5 retina TATTTCACAA 1.8 0.0018 P0.5 retina TGTTCAATCA 13.7 0.0137 P0.5 retina GCAGTTCACA (4) 7.9 0.0079 P0.5 retina ACCCTGCAGT (4) 5.9 0.0059 P0.5 retina ACCCTGCTGT 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P2.5 retina TGTTCAATCA 14.1 0.0141 P2.5 retina ACCCTGCAGT (4) 5.3 0.0053 P2.5 retina ACCCTGCTGT 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina GTGCTGCCAA (5) 1.8 0.0018 P4.5 retina TGTTCAATCA 19.8 0.0198 P4.5 retina GCAGTTCACA (4) 9.9 0.0099 P4.5 retina ACCCTGCAGT (4) 4 0.004 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TGTTCATCAA (2) 2 0.002 P6.5 retina ACCCTGCTGT 6.7 0.0067 P6.5 retina GCAGTTCACA (4) 6.7 0.0067 P6.5 retina TGTTCAATCA 6.7 0.0067 P6.5 retina ACCCTGCAGT (4) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TACAGTGACT (5) 1.7 0.0017 P6.5 retina TGTTCATCAA (2) 1.7 0.0017 P10.5 crx- retina ACCCTGCTGT 20.4 0.0204 P10.5 crx- retina ACCCTGCAGT (4) 5.6 0.0056 P10.5 crx- retina GTGCCTGCCA (4) 1.9 0.0019 P10.5 crx- retina TGTTCAATCA 1.9 0.0019 P10.5 crx+ retina TGTTCAATCA 13.5 0.0135 P10.5 crx+ retina ACCCTGCTGT 7.7 0.0077 P10.5 crx+ retina ACCCTGCAGT (4) 5.8 0.0058 P10.5 crx+ retina GCAGTTCACA (4) 3.8 0.0038 Adult retinal ACCCTGCTGT 14.8 0.0148 Adult retinal TGTTCAATCA 11.1 0.0111 Adult retinal ACCCTGCAGT (4) 5.6 0.0056 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TACAGTGACT (5) 1.9 0.0019 Adult retinal TATTTCACAA 1.9 0.0019 ONL GCAGTTCACA (4) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TGTTCAATCA 3.8 0.0038