Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.34489	Usp11	ubiquitin specific protease 11	X		236733
Gene Ontology	cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | nucleus | peptidase activity | ubiquitin thiolesterase activity | ubiquitin-dependent protein catabolism
Human Homolog	USP11[ubiquitin specific protease 11]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 100 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC TTCAAAAAAA (25) 13.1 0.0131 P8 Cb GC ATCCTGTGCT (5) 11.4 0.0114 P8 Cb GC ACCACCACAA 6.5 0.0065 P8 Cb GC TGCCTGCACA (5) 1.6 0.0016 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma TTCAAAAAAA (25) 37 0.037 Cb medulloblastoma ACCACCACAA 2.3 0.0023 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture ATCCTGTGCT (5) 12.6 0.0126 P8 GC+1d culture TTCAAAAAAA (25) 12.6 0.0126 P8 GC+1d culture ACCACCACAA 9.1 0.0091 P8 GC+1d culture ACCACCAAAA (2) 1.1 0.0011 P8 GC+1d culture ACTCCTCCCT (5) 1.1 0.0011 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture TTCAAAAAAA (25) 29.3 0.0293 P8 GC+SHH+1d culture ATCCTGTGCT (5) 17.6 0.0176 P8 GC+SHH+1d culture ACCACCAAAA (2) 7 0.007 P8 GC+SHH+1d culture ACTCCTCCCT (5) 3.5 0.0035 P8 GC+SHH+1d culture ACCACCACAA 1.2 0.0012 P8 GC+SHH+1d culture GGAATCTGGA (5) 1.2 0.0012 P8 GC+SHH+1d culture TGCCTGCACA (5) 1.2 0.0012 3T3 fibroblasts ATCCTGTGCT (5) 59.6 0.0596 E15 cortex TTCAAAAAAA (25) 29.7 0.0297 E15 cortex ACCACCACAA 4.9 0.0049 E15 cortex GAGAAGGAAG (8) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex ATCCTGTGCT (5) 4.5 0.0045 P1 cortex TTCAAAAAAA (25) 4.5 0.0045 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus TTCAAAAAAA (25) 7.2 0.0072 Hypothalamus AACAAAATAA (4) 1.8 0.0018 Hypothalamus ACCACCACAA 1.8 0.0018 Hypothalamus ACTCCTCCCT (5) 1.8 0.0018 Hypothalamus TGCCTGCACA (5) 1.8 0.0018 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina TTCAAAAAAA (25) 9.4 0.0094 E12.5 retina ACCACCACAA 5.6 0.0056 E12.5 retina GAGAAGGAAG (8) 1.9 0.0019 E12.5 retina GGAATCTGGA (5) 1.9 0.0019 E14.5 retina TTCAAAAAAA (25) 20 0.02 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina ACCACCACAA 5.5 0.0055 E14.5 retina ACCACCAAAA (2) 3.6 0.0036 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina TTCAAAAAAA (25) 9.1 0.0091 E16.5 retina ACCACCACAA 7.2 0.0072 E16.5 retina ACCACCAAAA (2) 1.8 0.0018 E16.5 retina CTTTTAATGC (6) 1.8 0.0018 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina TTCAAAAAAA (25) 36.4 0.0364 E18.5 retina ACCACCACAA 1.8 0.0018 E18.5 retina ACTCCTCCCT (5) 1.8 0.0018 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina TTCAAAAAAA (25) 9.8 0.0098 P0.5 retina ACCACCACAA 5.9 0.0059 P0.5 retina ACCACCAAAA (2) 3.9 0.0039 P0.5 retina ACTCCTCCCT (5) 3.9 0.0039 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina TTCAAAAAAA (25) 7 0.007 P2.5 retina ACCACCACAA 5.3 0.0053 P2.5 retina CTTTTAATGC (6) 1.8 0.0018 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina TTCAAAAAAA (25) 31.7 0.0317 P4.5 retina ACCACCAAAA (2) 2 0.002 P4.5 retina ACCACCACAA 2 0.002 P4.5 retina ATCCTGTGCT (5) 2 0.002 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina TTCAAAAAAA (25) 8.3 0.0083 P6.5 retina ACTCCTCCCT (5) 5 0.005 P6.5 retina ACCACCACAA 3.3 0.0033 P6.5 retina ATCCTGTGCT (5) 3.3 0.0033 P6.5 retina AACAAAATAA (4) 1.7 0.0017 P6.5 retina GGAATCTGGA (5) 1.7 0.0017 P10.5 crx- retina AACAAAATAA (4) 13 0.013 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina TTCAAAAAAA (25) 5.6 0.0056 P10.5 crx- retina ACTCCTCCCT (5) 3.7 0.0037 P10.5 crx- retina ATCCTGTGCT (5) 3.7 0.0037 P10.5 crx+ retina TTCAAAAAAA (25) 9.6 0.0096 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina ACCACCACAA 3.8 0.0038 P10.5 crx+ retina ATCCTGTGCT (5) 3.8 0.0038 P10.5 crx+ retina ACCACCAAAA (2) 1.9 0.0019 P10.5 crx+ retina ACTCCTCCCT (5) 1.9 0.0019 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal TTCAAAAAAA (25) 5.6 0.0056 Adult retinal ACCACCACAA 3.7 0.0037 Adult retinal ACTCCTCCCT (5) 3.7 0.0037 Adult retinal ACCACCAAAA (2) 1.9 0.0019 Adult retinal ATCCTGTGCT (5) 1.9 0.0019 Adult retinal CTTTTAATGC (6) 1.9 0.0019 Adult retinal TGCCTGCACA (5) 1.9 0.0019 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL TTCAAAAAAA (25) 3.8 0.0038 ONL AACAAAATAA (4) 1.9 0.0019 ONL ACTCCTCCCT (5) 1.9 0.0019 ONL GAGAAGGAAG (8) 1.9 0.0019 ONL TGCCTGCACA (5) 1.9 0.0019