Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.345385
2900092E17Rik
RIKEN cDNA 2900092E17 gene
7
67278
Mm.345385
1500031I19Rik
RIKEN cDNA 1500031I19 gene
7
69017
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 85 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
AGAAAAAAAA (
47
)
17.9
0.0179
P8 Cb GC
CACCATTCAG (
3
)
3.3
0.0033
P8 Cb GC
GCCAGCCTTT
(
6
)
3.3
0.0033
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
AGAAAAAAAA (
47
)
53.2
0.0532
Cb medulloblastoma
GCCAGCCTTT
(
6
)
13.9
0.0139
Cb medulloblastoma
CAGCATTCAG
(
4
)
11.6
0.0116
Cb medulloblastoma
CACCATTCAG (
3
)
4.6
0.0046
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
AGAAAAAAAA (
47
)
8
0.008
P8 GC+1d culture
GCCAGCCTTT
(
6
)
6.8
0.0068
P8 GC+1d culture
CACCATTCAG (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
AGAAAAAAAA (
47
)
14.1
0.0141
P8 GC+SHH+1d culture
GCCAGCCTTT
(
6
)
8.2
0.0082
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
GCCAGCCTTT
(
6
)
10.5
0.0105
3T3 fibroblasts
AGAAAAAAAA (
47
)
3.5
0.0035
3T3 fibroblasts
CACCATTCAG (
3
)
3.5
0.0035
3T3 fibroblasts
GGCAGTCCTG (
3
)
3.5
0.0035
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
AGAAAAAAAA (
47
)
14.8
0.0148
E15 cortex
GCCAGCCTTT
(
6
)
4.9
0.0049
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
AGAAAAAAAA (
47
)
9.1
0.0091
P1 cortex
CACCATTCAG (
3
)
9.1
0.0091
P1 cortex
CAGCATTCAG
(
4
)
9.1
0.0091
P1 cortex
CCCCTAACAA (
3
)
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
AGAAAAAAAA (
47
)
32.6
0.0326
Hypothalamus
GCCAGCCTTT
(
6
)
7.2
0.0072
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
AGAAAAAAAA (
47
)
20.7
0.0207
E12.5 retina
GGCAGTCCTG (
3
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
AGAAAAAAAA (
47
)
20
0.02
E14.5 retina
GCCAGCCTTT
(
6
)
12.8
0.0128
E14.5 retina
CACCATTCAG (
3
)
1.8
0.0018
E14.5 retina
GGCAGTCCTG (
3
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
AGAAAAAAAA (
47
)
10.9
0.0109
E16.5 retina
GCCAGCCTTT
(
6
)
10.9
0.0109
E16.5 retina
CAGCATTCAG
(
4
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
AGAAAAAAAA (
47
)
29.1
0.0291
E18.5 retina
GCCAGCCTTT
(
6
)
5.5
0.0055
E18.5 retina
CCCCTAACAA (
3
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
AGAAAAAAAA (
47
)
13.7
0.0137
P0.5 retina
CACCATTCAG (
3
)
3.9
0.0039
P0.5 retina
GCCAGCCTTT
(
6
)
3.9
0.0039
P0.5 retina
GGCAGTCCTG (
3
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
AGAAAAAAAA (
47
)
17.6
0.0176
P2.5 retina
GCCAGCCTTT
(
6
)
8.8
0.0088
P2.5 retina
CACCATTCAG (
3
)
3.5
0.0035
P2.5 retina
CAGCATTCAG
(
4
)
1.8
0.0018
P2.5 retina
CCCCTAACAA (
3
)
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
AGAAAAAAAA (
47
)
31.7
0.0317
P4.5 retina
GCCAGCCTTT
(
6
)
5.9
0.0059
P4.5 retina
CACCATTCAG (
3
)
4
0.004
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
AGAAAAAAAA (
47
)
13.3
0.0133
P6.5 retina
GCCAGCCTTT
(
6
)
11.7
0.0117
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
GCCAGCCTTT
(
6
)
14.9
0.0149
P10.5 crx- retina
AGAAAAAAAA (
47
)
7.4
0.0074
P10.5 crx- retina
CAGCATTCAG
(
4
)
3.7
0.0037
P10.5 crx- retina
CACCATTCAG (
3
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
AGAAAAAAAA (
47
)
5.8
0.0058
P10.5 crx+ retina
GCCAGCCTTT
(
6
)
5.8
0.0058
P10.5 crx+ retina
CACCATTCAG (
3
)
3.8
0.0038
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
AGAAAAAAAA (
47
)
5.6
0.0056
Adult retinal
GCCAGCCTTT
(
6
)
5.6
0.0056
Adult retinal
CACCATTCAG (
3
)
3.7
0.0037
Adult retinal
CAGCATTCAG
(
4
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
AGAAAAAAAA (
47
)
19.2
0.0192
ONL
CACCATTCAG (
3
)
1.9
0.0019
ONL
CCCCTAACAA (
3
)
1.9
0.0019
ONL
GCCAGCCTTT
(
6
)
1.9
0.0019
