Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.347492	Rom1	rod outer segment membrane protein 1	19	19 8.0 cM	19881
Gene Ontology	cell adhesion | extracellular space | G-protein coupled photoreceptor activity | integral to membrane | protein binding | vision
Human Homolog	ROM1[retinal outer segment membrane protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 43 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATGAACCAA (2) 1.6 0.0016 Cb medulloblastoma TGGAAGGTTA (5) 4.6 0.0046 Cb medulloblastoma AAATGCTGCT (5) 2.3 0.0023 P8 GC+1d culture TGGAAGGTTA (5) 2.3 0.0023 P8 GC+1d culture CAGTTTTCAG (4) 1.1 0.0011 P8 GC+1d culture TGGAAGGCTT (2) 1.1 0.0011 P8 GC+SHH+1d culture AGTGTGTGGA (3) 3.5 0.0035 P8 GC+SHH+1d culture TGGAAGGTTA (5) 3.5 0.0035 3T3 fibroblasts AAATGCTGCT (5) 3.5 0.0035 Hypothalamus AAATGCTGCT (5) 1.8 0.0018 E14.5 retina TGGAAGGTTA (5) 3.6 0.0036 E16.5 retina AAATGCTGCT (5) 1.8 0.0018 E18.5 retina CAGTTTTCAG (4) 1.8 0.0018 E18.5 retina TGGAAGGTTA (5) 1.8 0.0018 P0.5 retina GCTACAGGGA 3.9 0.0039 P0.5 retina CAGTTTTCAG (4) 2 0.002 P0.5 retina TGGAAGGTTA (5) 2 0.002 P2.5 retina GCTACAGGGA 7 0.007 P2.5 retina TGGAAGGTTA (5) 3.5 0.0035 P2.5 retina CAGTTTTCAG (4) 1.8 0.0018 P4.5 retina GCTACAGGGA 13.9 0.0139 P4.5 retina AATGAACCAA (2) 2 0.002 P4.5 retina CAGTTTTCAG (4) 2 0.002 P4.5 retina TGGAAGGTTA (5) 2 0.002 P6.5 retina GCTACAGGGA 75 0.075 P6.5 retina TGGAAGGTTA (5) 5 0.005 P6.5 retina CAGTTTTCAG (4) 3.3 0.0033 P6.5 retina AAGTGCTGCT (4) 1.7 0.0017 P10.5 crx- retina GCTACAGGGA 22.3 0.0223 P10.5 crx- retina GCTACAAGGA 3.7 0.0037 P10.5 crx- retina AAATGCTGCT (5) 1.9 0.0019 P10.5 crx- retina CAGTTTTCAG (4) 1.9 0.0019 P10.5 crx+ retina GCTACAGGGA 46.1 0.0461 P10.5 crx+ retina CAGTTTTCAG (4) 7.7 0.0077 P10.5 crx+ retina TGGAAGGCTT (2) 1.9 0.0019 Adult retinal GCTACAGGGA 268.5 0.2685 Adult retinal CAGTTTTCAG (4) 7.4 0.0074 Adult retinal AAGTGCTGCT (4) 5.6 0.0056 Adult retinal GCTACAAGGA 3.7 0.0037 ONL GCTACAGGGA 266.2 0.2662 ONL CAGTTTTCAG (4) 11.5 0.0115 ONL AATGAACCAA (2) 1.9 0.0019 ONL TGGAAGGCTT (2) 1.9 0.0019