Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.348374	Grik3	glutamate receptor, ionotropic, kainate 3	4	4 57.2 cM	14807
Gene Ontology	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity | glutamate-gated ion channel activity | inotropic glutamate receptor activity | inotropic glutamate receptor activity | ionotropic glutamate receptor complex | membrane | membrane fraction | potassium channel activity | potassium ion transport | protein self binding | receptor activity | synaptic transmission | transport | transporter activity
Human Homolog	GRIK3[glutamate receptor, ionotropic, kainate 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 89 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCTGGGTTC (6) 17.9 0.0179 P8 Cb GC ACCTCTCAGA (5) 13.1 0.0131 P8 Cb GC GCCTCCTGGG (10) 4.9 0.0049 P8 Cb GC CCCCTGGGGT (6) 3.3 0.0033 P8 Cb GC GCTGATCCGG (2) 1.6 0.0016 Cb medulloblastoma CCCTGGGTTC (6) 4.6 0.0046 Cb medulloblastoma ACCTCTCAGA (5) 2.3 0.0023 Cb medulloblastoma GAGAAGAACC (8) 2.3 0.0023 P8 GC+1d culture CCCTGGGTTC (6) 114.2 0.1142 P8 GC+1d culture GCCTCCTGGG (10) 9.1 0.0091 P8 GC+1d culture ACCTCTCAGA (5) 2.3 0.0023 P8 GC+1d culture CCTGGGTTCT (2) 2.3 0.0023 P8 GC+1d culture CAGATCCAAG (2) 1.1 0.0011 P8 GC+SHH+1d culture CCCTGGGTTC (6) 67.9 0.0679 P8 GC+SHH+1d culture GCCTCCTGGG (10) 8.2 0.0082 P8 GC+SHH+1d culture CAGATCCAAG (2) 2.3 0.0023 P8 GC+SHH+1d culture CCCCTGGGGT (6) 2.3 0.0023 P8 GC+SHH+1d culture ACCTCTCAGA (5) 1.2 0.0012 P8 GC+SHH+1d culture CCCTGGGTTT (3) 1.2 0.0012 P8 GC+SHH+1d culture CCTGGGTTCT (2) 1.2 0.0012 P8 GC+SHH+1d culture GAGAAGAACC (8) 1.2 0.0012 P8 GC+SHH+1d culture GCTGATCCGG (2) 1.2 0.0012 3T3 fibroblasts CCCTGGGTTC (6) 708 0.708 3T3 fibroblasts CCCCTGGGGT (6) 14 0.014 3T3 fibroblasts ACCTCTCAGA (5) 7 0.007 3T3 fibroblasts CCCTGGGTTT (3) 3.5 0.0035 3T3 fibroblasts GCCTCCTGGG (10) 3.5 0.0035 E15 cortex CCCTGGGTTC (6) 143.5 0.1435 E15 cortex GAGAAGAACC (8) 4.9 0.0049 E15 cortex GCCTCCTGGG (10) 4.9 0.0049 P1 cortex CCCTGGGTTC (6) 68.2 0.0682 P1 cortex CCCCTGGGGT (6) 9.1 0.0091 P1 cortex CCCTGGTTCT (2) 4.5 0.0045 Hypothalamus CCCTGGGTTC (6) 5.4 0.0054 E12.5 retina CCCTGGGTTC (6) 35.7 0.0357 E12.5 retina GCCTCCTGGG (10) 11.3 0.0113 E12.5 retina ACCTCTCAGA (5) 3.8 0.0038 E14.5 retina CCCTGGGTTC (6) 14.6 0.0146 E14.5 retina GCCTCCTGGG (10) 10.9 0.0109 E14.5 retina GCTGATCCGG (2) 3.6 0.0036 E14.5 retina ACCTCTCAGA (5) 1.8 0.0018 E14.5 retina CCCTGGGTTT (3) 1.8 0.0018 E14.5 retina GAGGAAGAAC 1.8 0.0018 E16.5 retina CCCTGGGTTC (6) 47.1 0.0471 E16.5 retina GCCTCCTGGG (10) 7.2 0.0072 E16.5 retina ACCTCTCAGA (5) 5.4 0.0054 E16.5 retina GAGAAGAACC (8) 3.6 0.0036 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina CCCTGGTTCT (2) 1.8 0.0018 E16.5 retina GCTGATCCGG (2) 1.8 0.0018 E18.5 retina CCCTGGGTTC (6) 12.7 0.0127 E18.5 retina ACCTCTCAGA (5) 1.8 0.0018 E18.5 retina GAGGAAGAAC 1.8 0.0018 P0.5 retina CCCTGGGTTC (6) 76.5 0.0765 P0.5 retina CCCCTGGGGT (6) 9.8 0.0098 P0.5 retina ACCTCTCAGA (5) 7.9 0.0079 P0.5 retina GCCTCCTGGG (10) 3.9 0.0039 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina CCCTGGGTTT (3) 2 0.002 P2.5 retina CCCTGGGTTC (6) 15.8 0.0158 P2.5 retina CCCCTGGGGT (6) 1.8 0.0018 P2.5 retina GCCTCCTGGG (10) 1.8 0.0018 P4.5 retina CCCTGGGTTC (6) 31.7 0.0317 P4.5 retina CCCTGGGTTT (3) 4 0.004 P4.5 retina ACCTCTCAGA (5) 2 0.002 P4.5 retina CCCCTGGGGT (6) 2 0.002 P4.5 retina GCTGATCCGG (2) 2 0.002 P6.5 retina CCCTGGGTTC (6) 45 0.045 P6.5 retina GCCTCCTGGG (10) 5 0.005 P6.5 retina ACCTCTCAGA (5) 3.3 0.0033 P6.5 retina CCCCTGGGGT (6) 1.7 0.0017 P6.5 retina CCCTGGTTCT (2) 1.7 0.0017 P6.5 retina CCTGGGTTCT (2) 1.7 0.0017 P6.5 retina GAGGAAGAAC 1.7 0.0017 P10.5 crx- retina CCCTGGGTTC (6) 83.6 0.0836 P10.5 crx- retina GCCTCCTGGG (10) 11.1 0.0111 P10.5 crx- retina GCTGATCCGG (2) 9.3 0.0093 P10.5 crx- retina ACCTCTCAGA (5) 3.7 0.0037 P10.5 crx+ retina CCCTGGGTTC (6) 5.8 0.0058 P10.5 crx+ retina GCCTCCTGGG (10) 5.8 0.0058 P10.5 crx+ retina GAGAAGAACC (8) 3.8 0.0038 P10.5 crx+ retina CCTGGGTTCT (2) 1.9 0.0019 Adult retinal CCCTGGGTTC (6) 31.5 0.0315 Adult retinal GCCTCCTGGG (10) 5.6 0.0056 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal CCCCTGGGGT (6) 3.7 0.0037 Adult retinal ACCTCTCAGA (5) 1.9 0.0019 ONL CCCTGGGTTC (6) 9.6 0.0096 ONL GCCTCCTGGG (10) 1.9 0.0019