Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.352429
H3f3a
H3 histone, family 3A
16
13 D2.3
15078
Human Homolog
H3F3A[H3 histone, family 3A]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 88 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TTTTTAATGT (
3
)
117.5
0.1175
P8 Cb GC
GGGTCAAAGG
(
6
)
55.5
0.0555
P8 Cb GC
CCAAACGTGT (
3
)
24.5
0.0245
P8 Cb GC
GAAAAAATAT (
8
)
11.4
0.0114
Cb medulloblastoma
GGGTCAAAGG
(
6
)
9.2
0.0092
Cb medulloblastoma
TTTTTAATGT (
3
)
6.9
0.0069
Cb medulloblastoma
GATAGCACAC
2.3
0.0023
P8 GC+1d culture
TTTTTAATGT (
3
)
150.7
0.1507
P8 GC+1d culture
GGGTCAAAGG
(
6
)
63.9
0.0639
P8 GC+1d culture
CCAAACGTGT (
3
)
12.6
0.0126
P8 GC+1d culture
GAAAAAATAT (
8
)
5.7
0.0057
P8 GC+1d culture
GATAGCACAC
2.3
0.0023
P8 GC+1d culture
GGTCAAAGGT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
TTTTTAATGT (
3
)
134.7
0.1347
P8 GC+SHH+1d culture
GGGTCAAAGG
(
6
)
58.5
0.0585
P8 GC+SHH+1d culture
CCAAACGTGT (
3
)
12.9
0.0129
P8 GC+SHH+1d culture
GAAAAAATAT (
8
)
4.7
0.0047
P8 GC+SHH+1d culture
GATAGCACAC
1.2
0.0012
3T3 fibroblasts
CCAAACGTGT (
3
)
17.5
0.0175
3T3 fibroblasts
GGGTCAAAGG
(
6
)
14
0.014
3T3 fibroblasts
TTTTTAATGT (
3
)
3.5
0.0035
E15 cortex
GGGTCAAAGG
(
6
)
29.7
0.0297
E15 cortex
CCAAACGTGT (
3
)
9.9
0.0099
E15 cortex
TTTTTAATGT (
3
)
4.9
0.0049
P1 cortex
TTTTTAATGT (
3
)
63.6
0.0636
P1 cortex
GGGTCAAAGG
(
6
)
22.7
0.0227
Hypothalamus
TTTTTAATGT (
3
)
23.5
0.0235
Hypothalamus
CCATATTGAT (
2
)
5.4
0.0054
Hypothalamus
GGGTCAAAGG
(
6
)
3.6
0.0036
Hypothalamus
CCAAACGTGT (
3
)
1.8
0.0018
Hypothalamus
GAAAAAATAT (
8
)
1.8
0.0018
Hypothalamus
GGTCAAAGGT
(
2
)
1.8
0.0018
E12.5 retina
TTTTTAATGT (
3
)
80.7
0.0807
E12.5 retina
CCAAACGTGT (
3
)
31.9
0.0319
E12.5 retina
GGGTCAAAGG
(
6
)
22.5
0.0225
E12.5 retina
GAAAAAATAT (
8
)
3.8
0.0038
E12.5 retina
GATAGCACAC
1.9
0.0019
E14.5 retina
TTTTTAATGT (
3
)
83.8
0.0838
E14.5 retina
GATAGCACAC
7.3
0.0073
E14.5 retina
CCAAACGTGT (
3
)
3.6
0.0036
E14.5 retina
GAAAAAATAT (
8
)
3.6
0.0036
E14.5 retina
GGGTCAAAGG
(
6
)
3.6
0.0036
E16.5 retina
TTTTTAATGT (
3
)
108.7
0.1087
E16.5 retina
GGGTCAAAGG
(
6
)
30.8
0.0308
E16.5 retina
CCAAACGTGT (
3
)
16.3
0.0163
E16.5 retina
GAAAAAATAT (
8
)
3.6
0.0036
E18.5 retina
TTTTTAATGT (
3
)
149.2
0.1492
E18.5 retina
GGGTCAAAGG
(
6
)
38.2
0.0382
E18.5 retina
GAAAAAATAT (
8
)
14.6
0.0146
E18.5 retina
CCAAACGTGT (
3
)
9.1
0.0091
E18.5 retina
GATAGCACAC
3.6
0.0036
P0.5 retina
TTTTTAATGT (
3
)
55
0.055
P0.5 retina
GGGTCAAAGG
(
6
)
51
0.051
P0.5 retina
GAAAAAATAT (
8
)
3.9
0.0039
P0.5 retina
CCAAACGTGT (
3
)
2
0.002
P0.5 retina
GATAGCACAC
2
0.002
P2.5 retina
TTTTTAATGT (
3
)
132
0.132
P2.5 retina
GGGTCAAAGG
(
6
)
40.5
0.0405
P2.5 retina
CCAAACGTGT (
3
)
14.1
0.0141
P2.5 retina
GAAAAAATAT (
8
)
14.1
0.0141
P2.5 retina
GATAGCACAC
3.5
0.0035
P4.5 retina
TTTTTAATGT (
3
)
132.8
0.1328
P4.5 retina
GGGTCAAAGG
(
6
)
29.7
0.0297
P4.5 retina
CCAAACGTGT (
3
)
4
0.004
P4.5 retina
GAAAAAATAT (
8
)
4
0.004
P6.5 retina
TTTTTAATGT (
3
)
110
0.11
P6.5 retina
GGGTCAAAGG
(
6
)
11.7
0.0117
P6.5 retina
CCAAACGTGT (
3
)
10
0.01
P6.5 retina
GAAAAAATAT (
8
)
5
0.005
P10.5 crx- retina
TTTTTAATGT (
3
)
107.8
0.1078
P10.5 crx- retina
GGGTCAAAGG
(
6
)
65
0.065
P10.5 crx- retina
CCAAACGTGT (
3
)
24.2
0.0242
P10.5 crx- retina
GATAGCACAC
5.6
0.0056
P10.5 crx- retina
GAAAAAATAT (
8
)
1.9
0.0019
P10.5 crx+ retina
TTTTTAATGT (
3
)
75
0.075
P10.5 crx+ retina
GGGTCAAAGG
(
6
)
36.5
0.0365
P10.5 crx+ retina
CCAAACGTGT (
3
)
11.5
0.0115
P10.5 crx+ retina
GAAAAAATAT (
8
)
3.8
0.0038
Adult retinal
GGGTCAAAGG
(
6
)
24.1
0.0241
Adult retinal
TTTTTAATGT (
3
)
13
0.013
Adult retinal
CCAAACGTGT (
3
)
3.7
0.0037
Adult retinal
GAAAAAATAT (
8
)
3.7
0.0037
Adult retinal
GATAGCACAC
3.7
0.0037
Adult retinal
GGTCAAAGGT
(
2
)
1.9
0.0019
ONL
TTTTTAATGT (
3
)
63.2
0.0632
ONL
GAAAAAATAT (
8
)
17.2
0.0172
ONL
CCAAACGTGT (
3
)
11.5
0.0115
ONL
GGGTCAAAGG
(
6
)
9.6
0.0096
