Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3555	Vdac1	voltage-dependent anion channel 1	11	11 29.0 cM	22333
Gene Ontology	anion transport | behavioral fear response | extracellular space | integral to membrane | learning | mitochondrial outer membrane | mitochondrion | nerve-nerve synaptic transmission | outer membrane | porin activity | synaptic transmission | voltage-dependent ion-selective channel activity
Human Homolog	VDAC1[voltage-dependent anion channel 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 53 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGAAAAAAAA (69) 8.2 0.0082 P8 Cb GC TACACACCTG (4) 8.2 0.0082 P8 Cb GC CTAAAATCAA (3) 1.6 0.0016 Cb medulloblastoma GGAAAAAAAA (69) 41.6 0.0416 Cb medulloblastoma GCCGTGCCTC 2.3 0.0023 P8 GC+1d culture TACACACCTG (4) 16 0.016 P8 GC+1d culture GGAAAAAAAA (69) 5.7 0.0057 P8 GC+1d culture CTAAAATCAA (3) 2.3 0.0023 P8 GC+SHH+1d culture TACACACCTG (4) 10.5 0.0105 P8 GC+SHH+1d culture GGAAAAAAAA (69) 7 0.007 P8 GC+SHH+1d culture CTAAAATCAA (3) 5.9 0.0059 P8 GC+SHH+1d culture GCCGTGCTCC (3) 1.2 0.0012 3T3 fibroblasts TACACACCTG (4) 17.5 0.0175 3T3 fibroblasts GCCGTGCCTC 10.5 0.0105 E15 cortex GCCGTGCCTC 9.9 0.0099 E15 cortex GGAAAAAAAA (69) 9.9 0.0099 E15 cortex TACACACCTG (4) 4.9 0.0049 P1 cortex TACACACCTG (4) 9.1 0.0091 P1 cortex GGAAAAAAAA (69) 4.5 0.0045 Hypothalamus GGAAAAAAAA (69) 14.5 0.0145 Hypothalamus TACACACCTG (4) 9.1 0.0091 E12.5 retina GCCGTGCCTC 1.9 0.0019 E12.5 retina GGAAAAAAAA (69) 1.9 0.0019 E14.5 retina GGAAAAAAAA (69) 10.9 0.0109 E16.5 retina GCCTGGAGGA (3) 3.6 0.0036 E16.5 retina GCCGTGCCTC 1.8 0.0018 E16.5 retina GGAAAAAAAA (69) 1.8 0.0018 E18.5 retina GGAAAAAAAA (69) 16.4 0.0164 E18.5 retina GCCGTGCTCC (3) 1.8 0.0018 P0.5 retina GGAAAAAAAA (69) 13.7 0.0137 P0.5 retina TACACACCTG (4) 5.9 0.0059 P0.5 retina CTAAAATCAA (3) 2 0.002 P0.5 retina GCCTGGAGGA (3) 2 0.002 P2.5 retina GGAAAAAAAA (69) 7 0.007 P2.5 retina CTAAAATCAA (3) 3.5 0.0035 P2.5 retina TACACACCTG (4) 3.5 0.0035 P4.5 retina GGAAAAAAAA (69) 13.9 0.0139 P4.5 retina GCCGTGCCTC 4 0.004 P4.5 retina TACACACCTG (4) 4 0.004 P4.5 retina GCCGTGCTCC (3) 2 0.002 P6.5 retina GGAAAAAAAA (69) 13.3 0.0133 P6.5 retina TACACACCTG (4) 8.3 0.0083 P6.5 retina CTAAAATCAA (3) 1.7 0.0017 P6.5 retina GCCGTGCCTC 1.7 0.0017 P10.5 crx- retina GGAAAAAAAA (69) 3.7 0.0037 P10.5 crx- retina CTAAAATCAA (3) 1.9 0.0019 P10.5 crx+ retina GGAAAAAAAA (69) 15.4 0.0154 P10.5 crx+ retina TACACACCTG (4) 9.6 0.0096 Adult retinal TACACACCTG (4) 13 0.013 Adult retinal GCCGTGCCTC 11.1 0.0111 Adult retinal GGAAAAAAAA (69) 5.6 0.0056 ONL GGAAAAAAAA (69) 17.2 0.0172 ONL TACACACCTG (4) 3.8 0.0038