Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3608	Pax6	paired box gene 6	2	2 E3 (2 58.0 cM)	18508
Gene Ontology	anterior/posterior pattern formation | axon guidance | brain development | cell differentiation | cell fate determination | development | DNA binding | eye morphogenesis (sensu Mammalia) | eye morphogenesis (sensu Mammalia) | eye photoreceptor cell development | metanephros development | nucleus | regulation of cell migration | regulation of transcription, DNA-dependent | salivary gland morphogenesis | transcription factor activity | transcription factor complex
Human Homolog	PAX6[paired box gene 6 (aniridia, keratitis)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

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SAGE Tags

Total 82 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAAAGCCTT (4) 16.3 0.0163 P8 Cb GC CAATCATTTG 9.8 0.0098 P8 Cb GC TGATCGAGAG (3) 3.3 0.0033 P8 Cb GC GCTGCCCTAC (5) 1.6 0.0016 P8 Cb GC GGCACCTCGG (2) 1.6 0.0016 P8 Cb GC GGTCCATAGT (2) 1.6 0.0016 P8 Cb GC GTTTTTTTTT (16) 1.6 0.0016 Cb medulloblastoma CCAAAGCCTT (4) 4.6 0.0046 Cb medulloblastoma GTTTTTTTTT (16) 4.6 0.0046 P8 GC+1d culture CAATCATTTG 9.1 0.0091 P8 GC+1d culture CCAAAGCCTT (4) 9.1 0.0091 P8 GC+1d culture GATTTAAGAG 2.3 0.0023 P8 GC+1d culture GCTGCCCTAC (5) 2.3 0.0023 P8 GC+1d culture GTTTTTTTTT (16) 1.1 0.0011 P8 GC+SHH+1d culture CCAAAGCCTT (4) 11.7 0.0117 P8 GC+SHH+1d culture CAATCATTTG 3.5 0.0035 P8 GC+SHH+1d culture GATTTAAGAG 2.3 0.0023 P8 GC+SHH+1d culture GCTGCCCTAC (5) 2.3 0.0023 P8 GC+SHH+1d culture GGTCCATAGT (2) 1.2 0.0012 P8 GC+SHH+1d culture GTTTTTTTTT (16) 1.2 0.0012 3T3 fibroblasts GGTCCATAGT (2) 3.5 0.0035 P1 cortex GCTGCCCTAC (5) 9.1 0.0091 Hypothalamus GCTGCCCTAC (5) 5.4 0.0054 Hypothalamus GGAGCAGCTG 3.6 0.0036 E12.5 retina CCAAAGCCTT (4) 28.2 0.0282 E12.5 retina CAATCATTTG 15 0.015 E12.5 retina GATTTAAGAG 3.8 0.0038 E12.5 retina GGTCCATAGT (2) 1.9 0.0019 E14.5 retina CAATCATTTG 7.3 0.0073 E14.5 retina CCAAAGCCTT (4) 7.3 0.0073 E14.5 retina GATTTAAGAG 1.8 0.0018 E14.5 retina GTTTTTTTTT (16) 1.8 0.0018 E14.5 retina TGATCGAGAG (3) 1.8 0.0018 E16.5 retina CAATCATTTG 10.9 0.0109 E16.5 retina CCAAAGCCTT (4) 10.9 0.0109 E16.5 retina GATTTAAGAG 7.2 0.0072 E16.5 retina GCTGCCCTAC (5) 1.8 0.0018 E18.5 retina CCAAAGCCTT (4) 21.8 0.0218 E18.5 retina CAATCATTTG 9.1 0.0091 E18.5 retina GCTGCCCTAC (5) 7.3 0.0073 E18.5 retina GATTTAAGAG 1.8 0.0018 E18.5 retina GTTTTTTTTT (16) 1.8 0.0018 P0.5 retina CCAAAGCCTT (4) 19.6 0.0196 P0.5 retina CAATCATTTG 17.7 0.0177 P0.5 retina GATTTAAGAG 5.9 0.0059 P0.5 retina GCTGCCCTAC (5) 5.9 0.0059 P0.5 retina GGAGCAGCTG 2 0.002 P0.5 retina GGCACCTCGG (2) 2 0.002 P0.5 retina GTTTTTTTTT (16) 2 0.002 P0.5 retina TGATCGAGAG (3) 2 0.002 P2.5 retina CCAAAGCCTT (4) 15.8 0.0158 P2.5 retina CAATCATTTG 10.6 0.0106 P2.5 retina GCTGGTGGTT (7) 7 0.007 P2.5 retina GATTTAAGAG 1.8 0.0018 P4.5 retina CCAAAGCCTT (4) 21.8 0.0218 P4.5 retina CAATCATTTG 9.9 0.0099 P4.5 retina GATTTAAGAG 5.9 0.0059 P4.5 retina GCTGCCCTAC (5) 4 0.004 P4.5 retina GCTGGTGGTT (7) 2 0.002 P4.5 retina GGCACCTCGG (2) 2 0.002 P4.5 retina GTTTTTTTTT (16) 2 0.002 P6.5 retina CCAAAGCCTT (4) 10 0.01 P6.5 retina CAATCATTTG 6.7 0.0067 P6.5 retina GCTGCCCTAC (5) 3.3 0.0033 P6.5 retina GGTCCATAGT (2) 3.3 0.0033 P6.5 retina GATTTAAGAG 1.7 0.0017 P10.5 crx- retina CAATCATTTG 14.9 0.0149 P10.5 crx- retina CCAAAGCCTT (4) 3.7 0.0037 P10.5 crx- retina GATTTAAGAG 3.7 0.0037 P10.5 crx- retina GTTTTTTTTT (16) 1.9 0.0019 P10.5 crx- retina TGATCGAGAG (3) 1.9 0.0019 P10.5 crx+ retina CCAAAGCCTT (4) 11.5 0.0115 P10.5 crx+ retina GCTGGTGGTT (7) 1.9 0.0019 P10.5 crx+ retina GGAGCAGCTG 1.9 0.0019 P10.5 crx+ retina GTTTTTTTTT (16) 1.9 0.0019 Adult retinal CCAAAGCCTT (4) 11.1 0.0111 Adult retinal CAATCATTTG 9.3 0.0093 Adult retinal GATTTAAGAG 1.9 0.0019 Adult retinal GCTGCCCTAC (5) 1.9 0.0019 Adult retinal GCTGGTGGTT (7) 1.9 0.0019 ONL CCAAAGCCTT (4) 5.7 0.0057 ONL CAATCATTTG 1.9 0.0019