Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3779	Bap1	Brca1 associated protein 1	14		104416
Gene Ontology	hydrolase activity | intracellular | negative regulation of cell proliferation | nucleus | protein binding | protein deubiquitination | ubiquitin thiolesterase activity | ubiquitin-dependent protein catabolism
Human Homolog	BAP1[BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 66 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCAGGGCCA (7) 3.3 0.0033 P8 Cb GC CTGGGAGGCC (4) 1.6 0.0016 P8 Cb GC GCAGCTTCCT (2) 1.6 0.0016 P8 Cb GC TCTTCTCTTA (4) 1.6 0.0016 Cb medulloblastoma GCCAGGGCCA (7) 9.2 0.0092 Cb medulloblastoma GGGGGGGGGG (112) 6.9 0.0069 Cb medulloblastoma GGCAGCTGTC (3) 2.3 0.0023 P8 GC+1d culture GCCAGGGCCA (7) 8 0.008 P8 GC+1d culture TCTTCTCTTA (4) 3.4 0.0034 P8 GC+1d culture TTTTTTTTTA (7) 3.4 0.0034 P8 GC+1d culture GGGGGGGGGG (112) 2.3 0.0023 P8 GC+1d culture AGCCTGATGG (4) 1.1 0.0011 P8 GC+SHH+1d culture GGGGGGGGGG (112) 7 0.007 P8 GC+SHH+1d culture TCTTCTCTTA (4) 3.5 0.0035 P8 GC+SHH+1d culture GCCAGGGCCA (7) 2.3 0.0023 P8 GC+SHH+1d culture GGCAGCTGTC (3) 1.2 0.0012 3T3 fibroblasts CACGCGCGCG (3) 3.5 0.0035 3T3 fibroblasts GCCAGGGCCA (7) 3.5 0.0035 3T3 fibroblasts GGCAGCTGTC (3) 3.5 0.0035 3T3 fibroblasts GGGGGGGGGG (112) 3.5 0.0035 E15 cortex AGCCTGATGG (4) 9.9 0.0099 E15 cortex CACGCGCGCG (3) 4.9 0.0049 E15 cortex CTGGGAGGCC (4) 4.9 0.0049 E15 cortex GCAGCTTCCT (2) 4.9 0.0049 E15 cortex GCCAGGGCCA (7) 4.9 0.0049 E15 cortex GGGGGGGGGG (112) 4.9 0.0049 P1 cortex TCTTCTCTTA (4) 13.6 0.0136 P1 cortex GCCAGGGCCA (7) 4.5 0.0045 P1 cortex TGCCCACACA 4.5 0.0045 P1 cortex TTTTTTTTTA (7) 4.5 0.0045 Hypothalamus GCCAGGGCCA (7) 5.4 0.0054 Hypothalamus CACGCGCGCG (3) 1.8 0.0018 Hypothalamus GGGGGGGGGG (112) 1.8 0.0018 E12.5 retina TCTTCTCTTA (4) 1.9 0.0019 E14.5 retina GCCAGGGCCA (7) 7.3 0.0073 E14.5 retina AGCCTGATGG (4) 1.8 0.0018 E16.5 retina GCCAGGGCCA (7) 5.4 0.0054 E18.5 retina GCCAGGGCCA (7) 3.6 0.0036 E18.5 retina TGCCCACACA 1.8 0.0018 P0.5 retina TCTTCTCTTA (4) 11.8 0.0118 P0.5 retina GCCAGGGCCA (7) 5.9 0.0059 P2.5 retina GCCAGGGCCA (7) 7 0.007 P2.5 retina GGGGGGGGGG (112) 7 0.007 P2.5 retina TTTTTTTTTA (7) 1.8 0.0018 P4.5 retina GGGGGGGGGG (112) 9.9 0.0099 P4.5 retina TCTTCTCTTA (4) 4 0.004 P4.5 retina CTGGGAGGCC (4) 2 0.002 P4.5 retina GCAGCTTCCT (2) 2 0.002 P4.5 retina GCCAGGGCCA (7) 2 0.002 P6.5 retina GGGGGGGGGG (112) 3.3 0.0033 P6.5 retina GCCAGGGCCA (7) 1.7 0.0017 P6.5 retina TCTTCTCTTA (4) 1.7 0.0017 P10.5 crx- retina GCCAGGGCCA (7) 9.3 0.0093 P10.5 crx- retina AGCCTGATGG (4) 1.9 0.0019 P10.5 crx- retina TCTTCTCTTA (4) 1.9 0.0019 P10.5 crx+ retina GGGGGGGGGG (112) 9.6 0.0096 P10.5 crx+ retina GCCAGGGCCA (7) 5.8 0.0058 Adult retinal TCTTCTCTTA (4) 5.6 0.0056 Adult retinal GGGGGGGGGG (112) 3.7 0.0037 Adult retinal AGCCTGATGG (4) 1.9 0.0019 Adult retinal GCCAGGGCCA (7) 1.9 0.0019 Adult retinal TGCCCACACA 1.9 0.0019 ONL GCCAGGGCCA (7) 5.7 0.0057 ONL CACGCGCGCG (3) 1.9 0.0019 ONL GGGGGGGGGG (112) 1.9 0.0019 ONL TGCCCACACA 1.9 0.0019