Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.38344
Nnp1
novel nuclear protein 1
10
10 42.0 cM
18114
Gene Ontology
nucleus
Human Homolog
D21S2056E[DNA segment on chromosome 21 (unique) 2056 expressed sequence]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 77 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CTCCTGCAGC
(
3
)
27.7
0.0277
P8 Cb GC
AATGAACTGG
(
7
)
1.6
0.0016
P8 Cb GC
GACCCTGCCT (
3
)
1.6
0.0016
P8 Cb GC
GCTGCTTCTC
(
5
)
1.6
0.0016
Cb medulloblastoma
CTCCTGCAGC
(
3
)
25.4
0.0254
Cb medulloblastoma
GGGGGGGGGG (
112
)
6.9
0.0069
Cb medulloblastoma
ACCTGCATCT
(
5
)
4.6
0.0046
Cb medulloblastoma
TGCCAGCCTG
(
2
)
2.3
0.0023
P8 GC+1d culture
CTCCTGCAGC
(
3
)
43.4
0.0434
P8 GC+1d culture
ACCTGCATCT
(
5
)
2.3
0.0023
P8 GC+1d culture
GGGGGGGGGG (
112
)
2.3
0.0023
P8 GC+1d culture
AATGAACTGG
(
7
)
1.1
0.0011
P8 GC+SHH+1d culture
CTCCTGCAGC
(
3
)
31.6
0.0316
P8 GC+SHH+1d culture
ACCTGCATCT
(
5
)
11.7
0.0117
P8 GC+SHH+1d culture
GGGGGGGGGG (
112
)
7
0.007
P8 GC+SHH+1d culture
TGCCAGCCTG
(
2
)
1.2
0.0012
3T3 fibroblasts
CTCCTGCAGC
(
3
)
56.1
0.0561
3T3 fibroblasts
GACCCTGCCT (
3
)
10.5
0.0105
3T3 fibroblasts
ACCTGCATCT
(
5
)
3.5
0.0035
3T3 fibroblasts
GGGGGGGGGG (
112
)
3.5
0.0035
3T3 fibroblasts
GTGGTGATGG (
3
)
3.5
0.0035
E15 cortex
CTCCTGCAGC
(
3
)
24.7
0.0247
E15 cortex
ACCTGCATCT
(
5
)
4.9
0.0049
E15 cortex
GGGGGGGGGG (
112
)
4.9
0.0049
P1 cortex
ACCTGCATCT
(
5
)
40.9
0.0409
P1 cortex
CTCCTGCAGC
(
3
)
13.6
0.0136
P1 cortex
TGCCAGCCTG
(
2
)
4.5
0.0045
Hypothalamus
CTCCTGCAGC
(
3
)
21.7
0.0217
Hypothalamus
ACCTGCATCT
(
5
)
3.6
0.0036
Hypothalamus
GGGGGGGGGG (
112
)
1.8
0.0018
E12.5 retina
CTCCTGCAGC
(
3
)
26.3
0.0263
E12.5 retina
ACCTGCATCT
(
5
)
1.9
0.0019
E12.5 retina
TGCCAGCCTG
(
2
)
1.9
0.0019
E14.5 retina
CTCCTGCAGC
(
3
)
23.7
0.0237
E14.5 retina
TGCCAGCCTG
(
2
)
5.5
0.0055
E14.5 retina
AATGAACTGG
(
7
)
3.6
0.0036
E14.5 retina
ACCTGCATCT
(
5
)
1.8
0.0018
E14.5 retina
GCTGCTTCTC
(
5
)
1.8
0.0018
E16.5 retina
CTCCTGCAGC
(
3
)
34.4
0.0344
E16.5 retina
TGCCAGCCTG
(
2
)
5.4
0.0054
E16.5 retina
ACCTGCATCT
(
5
)
3.6
0.0036
E18.5 retina
CTCCTGCAGC
(
3
)
38.2
0.0382
E18.5 retina
TGCCAGCCTG
(
2
)
3.6
0.0036
P0.5 retina
ACCTGCATCT
(
5
)
17.7
0.0177
P0.5 retina
CTCCTGCAGC
(
3
)
5.9
0.0059
P2.5 retina
CTCCTGCAGC
(
3
)
26.4
0.0264
P2.5 retina
GGGGGGGGGG (
112
)
7
0.007
P2.5 retina
AATGAACTGG
(
7
)
1.8
0.0018
P2.5 retina
ACCTGCATCT
(
5
)
1.8
0.0018
P2.5 retina
GCTGCTTCTC
(
5
)
1.8
0.0018
P2.5 retina
GTGGTGATGG (
3
)
1.8
0.0018
P2.5 retina
TGCCAGCCTG
(
2
)
1.8
0.0018
P4.5 retina
CTCCTGCAGC
(
3
)
9.9
0.0099
P4.5 retina
GGGGGGGGGG (
112
)
9.9
0.0099
P4.5 retina
AATGAACTGG
(
7
)
2
0.002
P4.5 retina
ACCTGCATCT
(
5
)
2
0.002
P6.5 retina
CTCCTGCAGC
(
3
)
31.7
0.0317
P6.5 retina
ACCTGCATCT
(
5
)
6.7
0.0067
P6.5 retina
GGGGGGGGGG (
112
)
3.3
0.0033
P6.5 retina
GACCCTGCCT (
3
)
1.7
0.0017
P6.5 retina
GCTGCTTCTC
(
5
)
1.7
0.0017
P6.5 retina
GTGGTGATGG (
3
)
1.7
0.0017
P6.5 retina
TGCCAGCCTG
(
2
)
1.7
0.0017
P10.5 crx- retina
ACCTGCATCT
(
5
)
9.3
0.0093
P10.5 crx- retina
CTCCTGCAGC
(
3
)
7.4
0.0074
P10.5 crx- retina
GACCCTGCCT (
3
)
1.9
0.0019
P10.5 crx+ retina
CTCCTGCAGC
(
3
)
23.1
0.0231
P10.5 crx+ retina
GGGGGGGGGG (
112
)
9.6
0.0096
P10.5 crx+ retina
ACCTGCATCT
(
5
)
1.9
0.0019
P10.5 crx+ retina
GCTGCTTCTC
(
5
)
1.9
0.0019
Adult retinal
ACCTGCATCT
(
5
)
11.1
0.0111
Adult retinal
CTCCTGCAGC
(
3
)
7.4
0.0074
Adult retinal
AATGAACTGG
(
7
)
3.7
0.0037
Adult retinal
GGGGGGGGGG (
112
)
3.7
0.0037
ONL
ACCTGCATCT
(
5
)
3.8
0.0038
ONL
GGGGGGGGGG (
112
)
1.9
0.0019
ONL
TGCCAGCCTG
(
2
)
1.9
0.0019
