Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.38376
Rad1
RAD1 homolog (S. pombe)
15
19355
Gene Ontology
DNA repair
|
exonuclease activity
|
nucleus
Human Homolog
RAD1[RAD1 homolog (S. pombe)]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 72 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
CGCCACCACG (
19
)
3.3
0.0033
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
CGCCACCACG (
19
)
6.9
0.0069
Cb medulloblastoma
GAGAAAATAG
(
2
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
CGCCACCACG (
19
)
2.3
0.0023
P8 GC+1d culture
GAGAAAATAG
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
CGCCACCACG (
19
)
9.4
0.0094
P8 GC+SHH+1d culture
GCTTTAATCC (
11
)
3.5
0.0035
P8 GC+SHH+1d culture
GAGAAAATAG
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GGGGCCGCCC (
4
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
CGCCACCACG (
19
)
9.9
0.0099
E15 cortex
GAGAAAATAG
(
2
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
CGCCACCACG (
19
)
4.5
0.0045
P1 cortex
GCTTTAATCC (
11
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
CGCCACCACG (
19
)
9.1
0.0091
Hypothalamus
ATTAAAAATG (
4
)
1.8
0.0018
Hypothalamus
GAGAAAATAG
(
2
)
1.8
0.0018
Hypothalamus
GGGGCCGCCC (
4
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
GAGAAAATAG
(
2
)
3.8
0.0038
E12.5 retina
AGGGGCAGAG (
3
)
1.9
0.0019
E12.5 retina
CGCCACCACG (
19
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
GAGAAAATAG
(
2
)
7.3
0.0073
E14.5 retina
ATTAAAAATG (
4
)
1.8
0.0018
E14.5 retina
CGCCACCACG (
19
)
1.8
0.0018
E14.5 retina
GCTTTAATCC (
11
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
CGCCACCACG (
19
)
9.1
0.0091
E16.5 retina
GAGAAAATAG
(
2
)
7.2
0.0072
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
GAGAAAATAG
(
2
)
3.6
0.0036
E18.5 retina
CGCCACCACG (
19
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
GAGAAAATAG
(
2
)
2
0.002
P0.5 retina
GCTTTAATCC (
11
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
CGCCACCACG (
19
)
8.8
0.0088
P2.5 retina
GAGAAAATAG
(
2
)
5.3
0.0053
P2.5 retina
GCTTTAATCC (
11
)
3.5
0.0035
P2.5 retina
GGGGCCGCCC (
4
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
CGCCACCACG (
19
)
7.9
0.0079
P4.5 retina
AGGGGCAGAG (
3
)
4
0.004
P4.5 retina
GCTTTAATCC (
11
)
4
0.004
P4.5 retina
GAGAAAATAG
(
2
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
CGCCACCACG (
19
)
5
0.005
P6.5 retina
GAGAAAATAG
(
2
)
5
0.005
P6.5 retina
GCTTTAATCC (
11
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
CGCCACCACG (
19
)
7.4
0.0074
P10.5 crx- retina
GAGAAAATAG
(
2
)
3.7
0.0037
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
CGCCACCACG (
19
)
3.8
0.0038
P10.5 crx+ retina
GCTTTAATCC (
11
)
3.8
0.0038
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
CGCCACCACG (
19
)
24.1
0.0241
Adult retinal
GAGAAAATAG
(
2
)
1.9
0.0019
Adult retinal
GCTTTAATCC (
11
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
CGCCACCACG (
19
)
15.3
0.0153
ONL
ATTAAAAATG (
4
)
1.9
0.0019
ONL
GAGAAAATAG
(
2
)
1.9
0.0019
ONL
GCTTTAATCC (
11
)
1.9
0.0019
