Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.38445	Tmod3	tropomodulin 3	9	9 38.0 cM	50875
Gene Ontology	actin binding | actin filament organization | cytoskeleton | F-actin capping protein complex | tropomyosin binding
Human Homolog	TMOD3[tropomodulin 3 (ubiquitous)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 136 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAGACGTACT (2) 19.6 0.0196 P8 Cb GC GTAGCTCACA (30) 16.3 0.0163 P8 Cb GC CCAGTGCCTG (6) 6.5 0.0065 P8 Cb GC TTGAAATACT (2) 6.5 0.0065 P8 Cb GC TGCTGGGAAG (8) 3.3 0.0033 P8 Cb GC CCTTGAAAAT (6) 1.6 0.0016 P8 Cb GC GGAAACATTT (2) 1.6 0.0016 Cb medulloblastoma TAGACGTACT (2) 20.8 0.0208 Cb medulloblastoma GTAGCTCACA (30) 18.5 0.0185 Cb medulloblastoma GGGAAGGGCT (7) 2.3 0.0023 Cb medulloblastoma TGCTGGGAAG (8) 2.3 0.0023 P8 GC+1d culture GTAGCTCACA (30) 27.4 0.0274 P8 GC+1d culture TAGACGTACT (2) 16 0.016 P8 GC+1d culture TGCTGGGAAG (8) 6.8 0.0068 P8 GC+1d culture CCAGTGCCTG (6) 5.7 0.0057 P8 GC+1d culture GGGAAGGGCT (7) 3.4 0.0034 P8 GC+1d culture CCTTGAAAAT (6) 2.3 0.0023 P8 GC+1d culture AATTTAGGCA (3) 1.1 0.0011 P8 GC+1d culture ACATAAAAAA (4) 1.1 0.0011 P8 GC+SHH+1d culture TAGACGTACT (2) 35.1 0.0351 P8 GC+SHH+1d culture GTAGCTCACA (30) 15.2 0.0152 P8 GC+SHH+1d culture GGGAAGGGCT (7) 8.2 0.0082 P8 GC+SHH+1d culture TGCTGGGAAG (8) 5.9 0.0059 P8 GC+SHH+1d culture TTGAAATACT (2) 4.7 0.0047 P8 GC+SHH+1d culture CCAGTGCCTG (6) 3.5 0.0035 P8 GC+SHH+1d culture CCTTGAAAAT (6) 2.3 0.0023 P8 GC+SHH+1d culture AATTTAGGCA (3) 1.2 0.0012 P8 GC+SHH+1d culture TAAATAGAAC (2) 1.2 0.0012 3T3 fibroblasts CCAGTGCCTG (6) 21 0.021 3T3 fibroblasts GTAGCTCACA (30) 14 0.014 3T3 fibroblasts TAGACGTACT (2) 3.5 0.0035 E15 cortex GTAGCTCACA (30) 29.7 0.0297 E15 cortex CCAGTGCCTG (6) 24.7 0.0247 E15 cortex GGGAAGGGCT (7) 14.8 0.0148 E15 cortex TGCTGGGAAG (8) 9.9 0.0099 P1 cortex GTAGCTCACA (30) 13.6 0.0136 P1 cortex GGGAAGGGCT (7) 9.1 0.0091 P1 cortex CCAGTGCCTG (6) 4.5 0.0045 P1 cortex TGCTGGGAAG (8) 4.5 0.0045 Hypothalamus TAGACGTACT (2) 32.6 0.0326 Hypothalamus GTAGCTCACA (30) 29 0.029 Hypothalamus GGGAAGGGCT (7) 7.2 0.0072 Hypothalamus TGCTGGGAAG (8) 7.2 0.0072 Hypothalamus TTGAAATACT (2) 3.6 0.0036 Hypothalamus ACGTAAAAAA (3) 1.8 0.0018 Hypothalamus CCAGTGCCTG (6) 1.8 0.0018 E12.5 retina GTAGCTCACA (30) 30 0.03 E12.5 retina TAGACGTACT (2) 18.8 0.0188 E12.5 retina CCAGTGCCTG (6) 7.5 0.0075 E12.5 retina AATTTAGGCA (3) 3.8 0.0038 E12.5 retina TTGAAATACT (2) 3.8 0.0038 E12.5 retina GGAAACATTT (2) 1.9 0.0019 E14.5 retina GTAGCTCACA (30) 31 0.031 E14.5 retina TAGACGTACT (2) 10.9 0.0109 E14.5 retina TGTTTTCTTT (4) 9.1 0.0091 E14.5 retina CCAGTGCCTG (6) 5.5 0.0055 E14.5 retina GGGAAGGGCT (7) 3.6 0.0036 E14.5 retina TTGAAATACT (2) 3.6 0.0036 E16.5 retina GTAGCTCACA (30) 41.7 0.0417 E16.5 retina TAGACGTACT (2) 9.1 0.0091 E16.5 retina CCAGTGCCTG (6) 3.6 0.0036 E16.5 retina TGCTGGGAAG (8) 3.6 0.0036 E16.5 retina TTGAAATACT (2) 3.6 0.0036 E16.5 retina AAATTGTATA (2) 1.8 0.0018 E18.5 retina GTAGCTCACA (30) 16.4 0.0164 E18.5 retina TAGACGTACT (2) 12.7 0.0127 E18.5 retina TTGAAATACT (2) 7.3 0.0073 E18.5 retina ACATAAAAAA (4) 3.6 0.0036 E18.5 retina AAATTGTATA (2) 1.8 0.0018 E18.5 retina CCAGTGCCTG (6) 1.8 0.0018 E18.5 retina GGGAAGGGCT (7) 1.8 0.0018 E18.5 retina TGCTGGGAAG (8) 1.8 0.0018 E18.5 retina TGTTTTCTTT (4) 1.8 0.0018 P0.5 retina GTAGCTCACA (30) 25.5 0.0255 P0.5 retina TAGACGTACT (2) 9.8 0.0098 P0.5 retina TGCTGGGAAG (8) 7.9 0.0079 P0.5 retina CCAGTGCCTG (6) 5.9 0.0059 P0.5 retina GGGAAGGGCT (7) 3.9 0.0039 P0.5 retina AAATTGTATA (2) 2 0.002 P0.5 retina TGTTTTCTTT (4) 2 0.002 P2.5 retina GTAGCTCACA (30) 22.9 0.0229 P2.5 retina CCAGTGCCTG (6) 8.8 0.0088 P2.5 retina GGGAAGGGCT (7) 8.8 0.0088 P2.5 retina TAGACGTACT (2) 8.8 0.0088 P2.5 retina GGAAACATTT (2) 3.5 0.0035 P2.5 retina TGCTGGGAAG (8) 3.5 0.0035 P2.5 retina ACGTAAAAAA (3) 1.8 0.0018 P2.5 retina TTGAAATACT (2) 1.8 0.0018 P4.5 retina GTAGCTCACA (30) 25.8 0.0258 P4.5 retina TAGACGTACT (2) 23.8 0.0238 P4.5 retina TTGAAATACT (2) 9.9 0.0099 P4.5 retina GGAAACATTT (2) 5.9 0.0059 P4.5 retina TGCTGGGAAG (8) 4 0.004 P4.5 retina CCAGTGCCTG (6) 2 0.002 P4.5 retina CCTTGAAAAT (6) 2 0.002 P4.5 retina GGGAAGGGCT (7) 2 0.002 P6.5 retina TAGACGTACT (2) 26.7 0.0267 P6.5 retina GTAGCTCACA (30) 18.3 0.0183 P6.5 retina CCAGTGCCTG (6) 8.3 0.0083 P6.5 retina TTGAAATACT (2) 8.3 0.0083 P6.5 retina AATTTAGGCA (3) 1.7 0.0017 P6.5 retina CCTTGAAAAT (6) 1.7 0.0017 P6.5 retina GGGAAGGGCT (7) 1.7 0.0017 P6.5 retina TGCTGGGAAG (8) 1.7 0.0017 P10.5 crx- retina GTAGCTCACA (30) 16.7 0.0167 P10.5 crx- retina TGCTGGGAAG (8) 11.1 0.0111 P10.5 crx- retina CCAGTGCCTG (6) 7.4 0.0074 P10.5 crx- retina GGGAAGGGCT (7) 5.6 0.0056 P10.5 crx- retina TAGACGTACT (2) 3.7 0.0037 P10.5 crx- retina TTGAAATACT (2) 3.7 0.0037 P10.5 crx- retina GGAAACATTT (2) 1.9 0.0019 P10.5 crx+ retina GTAGCTCACA (30) 28.8 0.0288 P10.5 crx+ retina TAGACGTACT (2) 17.3 0.0173 P10.5 crx+ retina TGCTGGGAAG (8) 11.5 0.0115 P10.5 crx+ retina CCAGTGCCTG (6) 9.6 0.0096 P10.5 crx+ retina GGAAACATTT (2) 7.7 0.0077 P10.5 crx+ retina AAATTGTATA (2) 1.9 0.0019 P10.5 crx+ retina GGGAAGGGCT (7) 1.9 0.0019 P10.5 crx+ retina TAAATAGAAC (2) 1.9 0.0019 P10.5 crx+ retina TTGAAATACT (2) 1.9 0.0019 Adult retinal TAGACGTACT (2) 31.5 0.0315 Adult retinal GTAGCTCACA (30) 16.7 0.0167 Adult retinal TGCTGGGAAG (8) 11.1 0.0111 Adult retinal CCAGTGCCTG (6) 3.7 0.0037 Adult retinal CCTTGAAAAT (6) 1.9 0.0019 Adult retinal GGAAACATTT (2) 1.9 0.0019 Adult retinal GGGAAGGGCT (7) 1.9 0.0019 Adult retinal TTGAAATACT (2) 1.9 0.0019 ONL GTAGCTCACA (30) 24.9 0.0249 ONL TAGACGTACT (2) 19.2 0.0192 ONL TGCTGGGAAG (8) 7.7 0.0077 ONL TTGAAATACT (2) 5.7 0.0057 ONL CCAGTGCCTG (6) 1.9 0.0019 ONL GGAAACATTT (2) 1.9 0.0019 ONL TAAATAGAAC (2) 1.9 0.0019 ONL TGTTTTCTTT (4) 1.9 0.0019