Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3879	Hif1a	hypoxia inducible factor 1, alpha subunit	12	12 C3 (12 31.0 cM)	15251
Gene Ontology	angiogenesis | cell differentiation | DNA binding | flagellum (sensu Eukarya) | nucleus | protein binding | regulation of transcription, DNA-dependent | response to hypoxia | response to hypoxia | signal transducer activity | signal transduction | transcription factor activity
Human Homolog	HIF1A[hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 6 In Situ Hybridization Images

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SAGE Tags

Total 145 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGGAAATGAG (7) 8.2 0.0082 P8 Cb GC AATTTTTGTT (2) 4.9 0.0049 P8 Cb GC AAATAAAAAA (11) 3.3 0.0033 P8 Cb GC CAGACTGTGG (4) 1.6 0.0016 P8 Cb GC TTTTGTTTTT (9) 1.6 0.0016 Cb medulloblastoma AAATAAAAAA (11) 4.6 0.0046 Cb medulloblastoma AGGAAATGAG (7) 4.6 0.0046 Cb medulloblastoma ATTTTTGTAT (6) 4.6 0.0046 Cb medulloblastoma ACATTATTTT (5) 2.3 0.0023 Cb medulloblastoma TTAAATAATG (2) 2.3 0.0023 Cb medulloblastoma TTTTGTTTTT (9) 2.3 0.0023 P8 GC+1d culture AATTTTTGTT (2) 5.7 0.0057 P8 GC+1d culture AGGAAATGAG (7) 2.3 0.0023 P8 GC+1d culture ATTTTTGTAT (6) 2.3 0.0023 P8 GC+1d culture CACCTGTGTG (6) 2.3 0.0023 P8 GC+1d culture AAGCTGTTGA (10) 1.1 0.0011 P8 GC+1d culture TTAAATAATG (2) 1.1 0.0011 P8 GC+SHH+1d culture AAATAAAAAA (11) 7 0.007 P8 GC+SHH+1d culture AATTTTTGTT (2) 5.9 0.0059 P8 GC+SHH+1d culture TTTTGTTTTT (9) 4.7 0.0047 P8 GC+SHH+1d culture AGGAAATGAG (7) 2.3 0.0023 P8 GC+SHH+1d culture ATTTTTGTAT (6) 2.3 0.0023 P8 GC+SHH+1d culture AAGCTGTTGA (10) 1.2 0.0012 P8 GC+SHH+1d culture CAATATATTC 1.2 0.0012 P8 GC+SHH+1d culture GCACATTAAT 1.2 0.0012 P8 GC+SHH+1d culture TTAAATAATG (2) 1.2 0.0012 3T3 fibroblasts CAGACTGCTG (2) 3.5 0.0035 3T3 fibroblasts GTGGTGTGGT (5) 3.5 0.0035 E15 cortex AGGAAATGAG (7) 14.8 0.0148 E15 cortex AATTTTTGTT (2) 9.9 0.0099 E15 cortex ATTTTTAGTT 4.9 0.0049 P1 cortex CTTTGTTAGT (2) 9.1 0.0091 P1 cortex TTTTGTTTTT (9) 9.1 0.0091 P1 cortex AAATAAAAAA (11) 4.5 0.0045 P1 cortex AATTTTTGTT (2) 4.5 0.0045 P1 cortex AGGAAATGAG (7) 4.5 0.0045 P1 cortex ATTTTTGTAT (6) 4.5 0.0045 Hypothalamus AAATAAAAAA (11) 7.2 0.0072 Hypothalamus AATTTTTGTT (2) 3.6 0.0036 Hypothalamus ACATTTAGGG 1.8 0.0018 Hypothalamus CAGACTGTGG (4) 1.8 0.0018 Hypothalamus GGGATGAAAA (2) 1.8 0.0018 Hypothalamus GTTTTGGTTT (3) 1.8 0.0018 Hypothalamus TTTTGTTTTT (9) 1.8 0.0018 E12.5 retina AATTTTTGTT (2) 7.5 0.0075 E12.5 retina ATTTTTGTAT (6) 5.6 0.0056 E12.5 retina AAATAAAAAA (11) 1.9 0.0019 E12.5 retina AGGAAATGAG (7) 1.9 0.0019 E12.5 retina CACCTGTGTG (6) 1.9 0.0019 E12.5 retina CAGACTGCTG (2) 1.9 0.0019 E12.5 retina CTTTGTTAGT (2) 1.9 0.0019 E14.5 retina AATTTTTGTT (2) 9.1 0.0091 E14.5 retina AAATAAAAAA (11) 5.5 0.0055 E14.5 retina AGGAAATGAG (7) 5.5 0.0055 E14.5 retina ATTTTTAGTT 3.6 0.0036 E14.5 retina CTTTGTTAGT (2) 3.6 0.0036 E14.5 retina TTTTGTTTTT (9) 3.6 0.0036 E14.5 retina ATTTTTGTAT (6) 1.8 0.0018 E14.5 retina GCACATTAAT 1.8 0.0018 E14.5 retina GTTTTGGTTT (3) 1.8 0.0018 E16.5 retina ATTTTTGTAT (6) 5.4 0.0054 E16.5 retina AGGAAATGAG (7) 3.6 0.0036 E16.5 retina AAATAAAAAA (11) 1.8 0.0018 E16.5 retina AATTTTTGTT (2) 1.8 0.0018 E16.5 retina ACATTATTTT (5) 1.8 0.0018 E16.5 retina ACATTTAGGG 1.8 0.0018 E16.5 retina CTTTGTTAGT (2) 1.8 0.0018 E16.5 retina GCACATTAAT 1.8 0.0018 E16.5 retina TTTTGTTTTT (9) 1.8 0.0018 E18.5 retina AAATAAAAAA (11) 9.1 0.0091 E18.5 retina GCACATTAAT 7.3 0.0073 E18.5 retina AGGAAATGAG (7) 3.6 0.0036 E18.5 retina ATTTTTGTAT (6) 1.8 0.0018 E18.5 retina CTTTGTTAGT (2) 1.8 0.0018 E18.5 retina TTAAATAATG (2) 1.8 0.0018 P0.5 retina AATTTTTGTT (2) 7.9 0.0079 P0.5 retina AAGCTGGTGG (7) 3.9 0.0039 P0.5 retina CTTTGTTAGT (2) 3.9 0.0039 P0.5 retina ACATTTAGGG 2 0.002 P0.5 retina AGGAAATGAG (7) 2 0.002 P0.5 retina CAATATATTC 2 0.002 P0.5 retina CAGACTGCTG (2) 2 0.002 P0.5 retina GCACATTAAT 2 0.002 P2.5 retina AAATAAAAAA (11) 5.3 0.0053 P2.5 retina TTAAATAATG (2) 5.3 0.0053 P2.5 retina AGGAAATGAG (7) 3.5 0.0035 P2.5 retina CTTTGTTAGT (2) 1.8 0.0018 P2.5 retina GGGATGAAAA (2) 1.8 0.0018 P4.5 retina AAATAAAAAA (11) 5.9 0.0059 P4.5 retina CTTTGTTAGT (2) 5.9 0.0059 P4.5 retina AGGAAATGAG (7) 4 0.004 P4.5 retina ATTTTTGTAT (6) 4 0.004 P4.5 retina AATTTTTGTT (2) 2 0.002 P4.5 retina TTAAATAATG (2) 2 0.002 P4.5 retina TTTTGTTTTT (9) 2 0.002 P6.5 retina AAATAAAAAA (11) 8.3 0.0083 P6.5 retina AGGAAATGAG (7) 8.3 0.0083 P6.5 retina ATTTTTGTAT (6) 5 0.005 P6.5 retina GCACATTAAT 5 0.005 P6.5 retina AATTTTTGTT (2) 3.3 0.0033 P6.5 retina CAGACTGCTG (2) 3.3 0.0033 P6.5 retina CTTTGTTAGT (2) 3.3 0.0033 P6.5 retina GTGGTGTGGT (5) 1.7 0.0017 P6.5 retina GTTTTGGTTT (3) 1.7 0.0017 P10.5 crx- retina AGGAAATGAG (7) 7.4 0.0074 P10.5 crx- retina CTTTGTTAGT (2) 7.4 0.0074 P10.5 crx- retina ATTTTTGTAT (6) 5.6 0.0056 P10.5 crx- retina GCACATTAAT 5.6 0.0056 P10.5 crx- retina AAATAAAAAA (11) 3.7 0.0037 P10.5 crx- retina AAGCTGTTGA (10) 3.7 0.0037 P10.5 crx- retina AATTTTTGTT (2) 3.7 0.0037 P10.5 crx- retina TTAAATAATG (2) 3.7 0.0037 P10.5 crx- retina CAGACTGCTG (2) 1.9 0.0019 P10.5 crx- retina CAGACTGTGG (4) 1.9 0.0019 P10.5 crx+ retina CAGACTGCTG (2) 7.7 0.0077 P10.5 crx+ retina TTAAATAATG (2) 7.7 0.0077 P10.5 crx+ retina AATTTTTGTT (2) 5.8 0.0058 P10.5 crx+ retina ACATTATTTT (5) 3.8 0.0038 P10.5 crx+ retina AGGAAATGAG (7) 3.8 0.0038 P10.5 crx+ retina CTTTGTTAGT (2) 3.8 0.0038 P10.5 crx+ retina AAATAAAAAA (11) 1.9 0.0019 P10.5 crx+ retina ATTTTTGTAT (6) 1.9 0.0019 P10.5 crx+ retina CAATATATTC 1.9 0.0019 P10.5 crx+ retina GGGATGAAAA (2) 1.9 0.0019 P10.5 crx+ retina GTTTTGGTTT (3) 1.9 0.0019 P10.5 crx+ retina TTTTGTTTTT (9) 1.9 0.0019 Adult retinal CTTTGTTAGT (2) 5.6 0.0056 Adult retinal AGGAAATGAG (7) 3.7 0.0037 Adult retinal GCACATTAAT 3.7 0.0037 Adult retinal AAATAAAAAA (11) 1.9 0.0019 Adult retinal AAGCTGGTGG (7) 1.9 0.0019 Adult retinal AATTTTTGTT (2) 1.9 0.0019 Adult retinal ACATTATTTT (5) 1.9 0.0019 Adult retinal ATTTTTGTAT (6) 1.9 0.0019 Adult retinal CACCTGTGTG (6) 1.9 0.0019 Adult retinal CAGACTGCTG (2) 1.9 0.0019 ONL GTGGTGTGGT (5) 13.4 0.0134 ONL CTTTGTTAGT (2) 7.7 0.0077 ONL CAGACTGCTG (2) 5.7 0.0057 ONL AAATAAAAAA (11) 3.8 0.0038 ONL AGGAAATGAG (7) 3.8 0.0038 ONL AAGCTGGTGG (7) 1.9 0.0019 ONL ACATTATTTT (5) 1.9 0.0019 ONL ATTTTTAGTT 1.9 0.0019 ONL ATTTTTGTAT (6) 1.9 0.0019