Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.38993	Clstn1	calsyntenin 1	4	4	65945
Gene Ontology	calcium ion binding | calcium ion homeostasis | cell adhesion | homophilic cell adhesion | integral to membrane | membrane | postsynaptic membrane | protein binding
Human Homolog	CLSTN1[calsyntenin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 97 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCCTGTCCCC (3) 8.2 0.0082 P8 Cb GC GGGTTGGCCC (2) 4.9 0.0049 P8 Cb GC GGCTTTCCAG (8) 3.3 0.0033 P8 Cb GC CACTAGTTTG 1.6 0.0016 P8 Cb GC TATAAAGTGG 1.6 0.0016 P8 Cb GC TCCCTGAAGA (5) 1.6 0.0016 Cb medulloblastoma TCCTGTCCCC (3) 16.2 0.0162 Cb medulloblastoma GCTGCCCAGC (6) 2.3 0.0023 Cb medulloblastoma GGAGGGCGGG 2.3 0.0023 Cb medulloblastoma GGCTTTCCAG (8) 2.3 0.0023 P8 GC+1d culture TCCTGTCCCC (3) 12.6 0.0126 P8 GC+1d culture GGCTTTCCAG (8) 3.4 0.0034 P8 GC+1d culture CACTAGTTTG 1.1 0.0011 P8 GC+1d culture GAGACATATG (2) 1.1 0.0011 P8 GC+1d culture GCTGCCCAGC (6) 1.1 0.0011 P8 GC+1d culture GGGTTGGCCC (2) 1.1 0.0011 P8 GC+1d culture TATAAAGTGG 1.1 0.0011 P8 GC+SHH+1d culture TCCTGTCCCC (3) 8.2 0.0082 P8 GC+SHH+1d culture CACTAGTTTG 4.7 0.0047 P8 GC+SHH+1d culture GAGACATATG (2) 1.2 0.0012 P8 GC+SHH+1d culture GCTCTGCAGT (4) 1.2 0.0012 P8 GC+SHH+1d culture GGAGGGCGGC (3) 1.2 0.0012 P8 GC+SHH+1d culture TCCCTGAAGA (5) 1.2 0.0012 3T3 fibroblasts GGCTTTCCAG (8) 3.5 0.0035 3T3 fibroblasts TCCTGTCCCC (3) 3.5 0.0035 E15 cortex TCCTGTCCCC (3) 4.9 0.0049 P1 cortex TCCTGTCCCC (3) 4.5 0.0045 Hypothalamus TCCTGTCCCC (3) 10.9 0.0109 Hypothalamus CACTAGTTTG 3.6 0.0036 Hypothalamus GGAGGGCGGC (3) 3.6 0.0036 Hypothalamus TATAAAGTGG 3.6 0.0036 Hypothalamus GAGACATATG (2) 1.8 0.0018 Hypothalamus GCTCTGCAGT (4) 1.8 0.0018 Hypothalamus GGCTTTCCAG (8) 1.8 0.0018 E12.5 retina GCTGCCCAGC (6) 3.8 0.0038 E12.5 retina CACTAGTTTG 1.9 0.0019 E12.5 retina GGCTTTCCAG (8) 1.9 0.0019 E12.5 retina TATAAAGTGG 1.9 0.0019 E12.5 retina TCCCTGAAGA (5) 1.9 0.0019 E14.5 retina GGGCCCTGGG (9) 5.5 0.0055 E14.5 retina TCCTGTCCCC (3) 5.5 0.0055 E14.5 retina ACACAGGAAG (4) 1.8 0.0018 E14.5 retina GCTGCCCAGC (6) 1.8 0.0018 E14.5 retina TATAAAGTGG 1.8 0.0018 E16.5 retina TCCTGTCCCC (3) 5.4 0.0054 E16.5 retina TCCCTGAAGA (5) 3.6 0.0036 E16.5 retina ACACAGGAAG (4) 1.8 0.0018 E16.5 retina GGCTTTCCAG (8) 1.8 0.0018 E18.5 retina ACACAGGAAG (4) 1.8 0.0018 E18.5 retina GGAGGGCGGG 1.8 0.0018 E18.5 retina GGCTTTCCAG (8) 1.8 0.0018 E18.5 retina TATAAAGTGG 1.8 0.0018 E18.5 retina TCCTGTCCCC (3) 1.8 0.0018 E18.5 retina TTCCCCCCCC (8) 1.8 0.0018 P0.5 retina TCCTGTCCCC (3) 13.7 0.0137 P0.5 retina CACTAGTTTG 2 0.002 P0.5 retina GGAGGGCGGC (3) 2 0.002 P0.5 retina GGCTTTCCAG (8) 2 0.002 P2.5 retina TCCTGTCCCC (3) 10.6 0.0106 P2.5 retina GGCTTTCCAG (8) 5.3 0.0053 P2.5 retina CACTAGTTTG 1.8 0.0018 P2.5 retina GCTGCCCAGC (6) 1.8 0.0018 P2.5 retina TCCCTGAAGA (5) 1.8 0.0018 P4.5 retina TCCTGTCCCC (3) 11.9 0.0119 P4.5 retina GGAGGGCGGC (3) 4 0.004 P4.5 retina CACTAGTTTG 2 0.002 P4.5 retina GAGACATATG (2) 2 0.002 P4.5 retina GGCTTTCCAG (8) 2 0.002 P4.5 retina TATAAAGTGG 2 0.002 P6.5 retina TCCTGTCCCC (3) 20 0.02 P6.5 retina CACTAGTTTG 8.3 0.0083 P6.5 retina TTCCCCCCCC (8) 3.3 0.0033 P6.5 retina GAGACATATG (2) 1.7 0.0017 P6.5 retina GGAGGGCGGC (3) 1.7 0.0017 P6.5 retina GGAGGGCGGG 1.7 0.0017 P6.5 retina TCCCTGAAGA (5) 1.7 0.0017 P10.5 crx- retina TCCTGTCCCC (3) 13 0.013 P10.5 crx- retina GCTCTGCAGT (4) 1.9 0.0019 P10.5 crx- retina GGAGGGCGGC (3) 1.9 0.0019 P10.5 crx- retina GGCTTTCCAG (8) 1.9 0.0019 P10.5 crx+ retina TCCTGTCCCC (3) 30.8 0.0308 P10.5 crx+ retina CACTAGTTTG 5.8 0.0058 P10.5 crx+ retina GGCTTTCCAG (8) 5.8 0.0058 P10.5 crx+ retina GCTGCCCAGC (6) 3.8 0.0038 P10.5 crx+ retina TATAAAGTGG 3.8 0.0038 P10.5 crx+ retina GGAGGGCGGC (3) 1.9 0.0019 P10.5 crx+ retina GGGTTGGCCC (2) 1.9 0.0019 Adult retinal TCCTGTCCCC (3) 20.4 0.0204 Adult retinal CACTAGTTTG 5.6 0.0056 Adult retinal GGCTTTCCAG (8) 3.7 0.0037 Adult retinal GAGACATATG (2) 1.9 0.0019 Adult retinal GGAGGGCGGG 1.9 0.0019 Adult retinal TATAAAGTGG 1.9 0.0019 ONL TCCTGTCCCC (3) 15.3 0.0153 ONL CACTAGTTTG 9.6 0.0096 ONL GAGACATATG (2) 3.8 0.0038 ONL GGCTTTCCAG (8) 1.9 0.0019