Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.39093	Shox2	short stature homeobox 2	3	3 31.6 cM	20429
Gene Ontology	development | DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	SHOX2[short stature homeobox 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 35 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC GTGTTTTAAA (3) 1.6 0.0016 Cb medulloblastoma GTGTTTTAAA (3) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GTGTTTTAAA (3) 10.3 0.0103 P8 GC+SHH+1d culture GTGTTTTAAA (3) 7 0.007 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 3T3 fibroblasts GTGTTTTAAA (3) 10.5 0.0105 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus GTGTTTTAAA (3) 3.6 0.0036 Hypothalamus AAAATAGTAA 1.8 0.0018 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GTGTTTTAAA (3) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GTGTTTTAAA (3) 5.5 0.0055 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GTGTTTTAAA (3) 1.8 0.0018 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GTGTTTTAAA (3) 5.5 0.0055 E18.5 retina AAAATAGTAA 1.8 0.0018 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina GTGTTTTAAA (3) 2 0.002 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina GTGTTTTAAA (3) 3.5 0.0035 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina AAAATAGTAA 1.7 0.0017 P10.5 crx- retina GTGTTTTAAA (3) 1.9 0.0019 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina GTGTTTTAAA (3) 1.9 0.0019 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 ONL TTTTTTTTTT (433) 3.8 0.0038