Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3974	Usp4	ubiquitin specific protease 4 (proto-oncogene)	9	9 60.0 cM	22258
Gene Ontology	cell growth and/or maintenance | cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | nucleus | peptidase activity | ubiquitin cycle | ubiquitin thiolesterase activity | ubiquitin-dependent protein catabolism
Human Homolog	USP4[ubiquitin specific protease 4 (proto-oncogene)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGACCCACC (3) 6.5 0.0065 P8 Cb GC GCCTGTTTGT (4) 6.5 0.0065 P8 Cb GC GACACCAACT (3) 1.6 0.0016 Cb medulloblastoma GCCTGTTTGT (4) 16.2 0.0162 Cb medulloblastoma AAGACCCACC (3) 4.6 0.0046 Cb medulloblastoma GACACCAACT (3) 2.3 0.0023 Cb medulloblastoma GGGGATGAGG (7) 2.3 0.0023 P8 GC+1d culture AAGACCCACC (3) 10.3 0.0103 P8 GC+1d culture GCCTGTTTGT (4) 6.8 0.0068 P8 GC+1d culture CCACTGTGCA 2.3 0.0023 P8 GC+1d culture GACACCAACT (3) 2.3 0.0023 P8 GC+SHH+1d culture AAGACCCACC (3) 8.2 0.0082 P8 GC+SHH+1d culture GCCTGTTTGT (4) 7 0.007 P8 GC+SHH+1d culture CCACTGTGCA 2.3 0.0023 P8 GC+SHH+1d culture GGCCCGGCAG (5) 1.2 0.0012 3T3 fibroblasts GCCTGTTTGT (4) 3.5 0.0035 E15 cortex AAGACCCACC (3) 4.9 0.0049 E15 cortex GCCTGTTTGT (4) 4.9 0.0049 E15 cortex TAGATGCTGG (2) 4.9 0.0049 P1 cortex AAGACCCACC (3) 9.1 0.0091 P1 cortex GCCTGTTTGT (4) 9.1 0.0091 Hypothalamus AAGACCCACC (3) 5.4 0.0054 Hypothalamus GCCTGTTTGT (4) 3.6 0.0036 Hypothalamus GTCTGTTTGT (7) 3.6 0.0036 Hypothalamus GACACCAATG (2) 1.8 0.0018 Hypothalamus GGCCCGGCAG (5) 1.8 0.0018 E12.5 retina GCCTGTTTGT (4) 13.1 0.0131 E12.5 retina AAGACCCACC (3) 9.4 0.0094 E12.5 retina GGGGATGAGG (7) 1.9 0.0019 E14.5 retina GCCTGTTTGT (4) 21.9 0.0219 E14.5 retina AAGACCCACC (3) 10.9 0.0109 E14.5 retina CCACTGTGCA 1.8 0.0018 E14.5 retina TAGATGCTGG (2) 1.8 0.0018 E16.5 retina GCCTGTTTGT (4) 18.1 0.0181 E16.5 retina AAGACCCACC (3) 3.6 0.0036 E16.5 retina GTCTGTTTGT (7) 1.8 0.0018 E16.5 retina TAGATGCTGG (2) 1.8 0.0018 E18.5 retina GCCTGTTTGT (4) 10.9 0.0109 E18.5 retina TAGATGCTGG (2) 1.8 0.0018 P0.5 retina GCCTGTTTGT (4) 9.8 0.0098 P0.5 retina AAGACCCACC (3) 3.9 0.0039 P0.5 retina GGGGATGAGG (7) 2 0.002 P2.5 retina GCCTGTTTGT (4) 19.4 0.0194 P2.5 retina TAGATGCTGG (2) 1.8 0.0018 P4.5 retina GCCTGTTTGT (4) 25.8 0.0258 P4.5 retina AAGACCCACC (3) 5.9 0.0059 P4.5 retina GACACCAATG (2) 2 0.002 P6.5 retina GCCTGTTTGT (4) 8.3 0.0083 P6.5 retina AAGACCCACC (3) 5 0.005 P6.5 retina CCACTGTGCA 1.7 0.0017 P6.5 retina GACACCAATG (2) 1.7 0.0017 P10.5 crx- retina AAGACCCACC (3) 5.6 0.0056 P10.5 crx- retina GACACCAATG (2) 1.9 0.0019 P10.5 crx- retina GCCTGTTTGT (4) 1.9 0.0019 P10.5 crx- retina GGCCCGGCAG (5) 1.9 0.0019 P10.5 crx+ retina AAGACCCACC (3) 9.6 0.0096 P10.5 crx+ retina GCCTGTTTGT (4) 5.8 0.0058 P10.5 crx+ retina CCACTGTGCA 1.9 0.0019 P10.5 crx+ retina GGGGATGAGG (7) 1.9 0.0019 Adult retinal GCCTGTTTGT (4) 13 0.013 Adult retinal AAGACCCACC (3) 5.6 0.0056 Adult retinal GGCCCGGCAG (5) 3.7 0.0037 Adult retinal GACACCAATG (2) 1.9 0.0019 Adult retinal GTCTGTTTGT (7) 1.9 0.0019 ONL GCCTGTTTGT (4) 15.3 0.0153 ONL AAGACCCACC (3) 5.7 0.0057 ONL GACACCAACT (3) 5.7 0.0057 ONL CCACTGTGCA 3.8 0.0038 ONL GGGGATGAGG (7) 1.9 0.0019