Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3981	Cops6	COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)	5	5 G2	26893
Gene Ontology	protein binding | signalosome complex
Human Homolog	COPS6[COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 86 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGCACTTTT (3) 29.4 0.0294 P8 Cb GC GACCTGAGTA (2) 9.8 0.0098 P8 Cb GC GAGATCCTGG (5) 4.9 0.0049 P8 Cb GC GAGAGGCCAG 1.6 0.0016 P8 Cb GC GTTGAAGGGA (2) 1.6 0.0016 P8 Cb GC TCACAGCTCC 1.6 0.0016 Cb medulloblastoma GACCTGAGTA (2) 16.2 0.0162 Cb medulloblastoma CTGCACTTTT (3) 4.6 0.0046 Cb medulloblastoma GAGATCCTGG (5) 2.3 0.0023 Cb medulloblastoma GCCTACCTCG 2.3 0.0023 P8 GC+1d culture CTGCACTTTT (3) 20.5 0.0205 P8 GC+1d culture GACCTGAGTA (2) 17.1 0.0171 P8 GC+1d culture GAGATCCTGG (5) 6.8 0.0068 P8 GC+1d culture TACACAACAC (3) 1.1 0.0011 P8 GC+1d culture TCACAGCTCC 1.1 0.0011 P8 GC+SHH+1d culture CTGCACTTTT (3) 36.3 0.0363 P8 GC+SHH+1d culture GACCTGAGTA (2) 21.1 0.0211 P8 GC+SHH+1d culture GAGATCCTGG (5) 3.5 0.0035 P8 GC+SHH+1d culture CGCTCCCAGG 1.2 0.0012 P8 GC+SHH+1d culture GAACAGCTGT (4) 1.2 0.0012 P8 GC+SHH+1d culture TACACAACAC (3) 1.2 0.0012 P8 GC+SHH+1d culture TCACAGCTCC 1.2 0.0012 3T3 fibroblasts GACCTGAGTA (2) 14 0.014 3T3 fibroblasts GAGATCCTGG (5) 10.5 0.0105 3T3 fibroblasts AAAGCTGAAC (3) 3.5 0.0035 3T3 fibroblasts CTGCACTTTT (3) 3.5 0.0035 E15 cortex GAGATCCTGG (5) 14.8 0.0148 E15 cortex CTGCACTTTT (3) 4.9 0.0049 E15 cortex GACCTGAGTA (2) 4.9 0.0049 E15 cortex GCCTACCTCG 4.9 0.0049 P1 cortex GACCTGAGTA (2) 4.5 0.0045 P1 cortex GAGATCCTGG (5) 4.5 0.0045 P1 cortex GCTCCCAGGA (6) 4.5 0.0045 Hypothalamus GACCTGAGTA (2) 25.4 0.0254 Hypothalamus GAGATCCTGG (5) 3.6 0.0036 E12.5 retina GACCTGAGTA (2) 31.9 0.0319 E12.5 retina CTGCACTTTT (3) 28.2 0.0282 E12.5 retina GAACAGCTGT (4) 1.9 0.0019 E12.5 retina GAGATCCTGG (5) 1.9 0.0019 E12.5 retina TCACAGCTCC 1.9 0.0019 E14.5 retina CTGCACTTTT (3) 31 0.031 E14.5 retina GACCTGAGTA (2) 10.9 0.0109 E14.5 retina GAACAGCTGT (4) 1.8 0.0018 E14.5 retina GCTCCCAGGA (6) 1.8 0.0018 E16.5 retina CTGCACTTTT (3) 58 0.058 E16.5 retina GACCTGAGTA (2) 19.9 0.0199 E16.5 retina GAACAGCTGT (4) 3.6 0.0036 E16.5 retina GAGATCCTGG (5) 3.6 0.0036 E16.5 retina CGCTCCCAGG 1.8 0.0018 E18.5 retina GACCTGAGTA (2) 34.6 0.0346 E18.5 retina CTGCACTTTT (3) 32.7 0.0327 E18.5 retina GAGATCCTGG (5) 7.3 0.0073 P0.5 retina GACCTGAGTA (2) 27.5 0.0275 P0.5 retina CTGCACTTTT (3) 25.5 0.0255 P0.5 retina GAGATCCTGG (5) 11.8 0.0118 P0.5 retina GCTCCCAGGA (6) 2 0.002 P2.5 retina CTGCACTTTT (3) 22.9 0.0229 P2.5 retina GACCTGAGTA (2) 21.1 0.0211 P4.5 retina GACCTGAGTA (2) 31.7 0.0317 P4.5 retina CTGCACTTTT (3) 25.8 0.0258 P4.5 retina GAGATCCTGG (5) 2 0.002 P4.5 retina GTTGAAGGGA (2) 2 0.002 P6.5 retina GACCTGAGTA (2) 13.3 0.0133 P6.5 retina GAGATCCTGG (5) 5 0.005 P6.5 retina CTGCACTTTT (3) 1.7 0.0017 P6.5 retina GAGAGGCCAG 1.7 0.0017 P6.5 retina GTTGAAGGGA (2) 1.7 0.0017 P6.5 retina TACACAACAC (3) 1.7 0.0017 P10.5 crx- retina GACCTGAGTA (2) 27.9 0.0279 P10.5 crx- retina GAGATCCTGG (5) 5.6 0.0056 P10.5 crx- retina GAACAGCTGT (4) 3.7 0.0037 P10.5 crx- retina TCACAGCTCC 3.7 0.0037 P10.5 crx- retina CTGCACTTTT (3) 1.9 0.0019 P10.5 crx- retina GTTGAAGGGA (2) 1.9 0.0019 P10.5 crx- retina TACACAACAC (3) 1.9 0.0019 P10.5 crx+ retina GACCTGAGTA (2) 51.9 0.0519 P10.5 crx+ retina GAGATCCTGG (5) 3.8 0.0038 P10.5 crx+ retina AAAGCTGAAC (3) 1.9 0.0019 Adult retinal GACCTGAGTA (2) 9.3 0.0093 Adult retinal GAGATCCTGG (5) 3.7 0.0037 Adult retinal GCCTACCTCG 1.9 0.0019 Adult retinal GCTCCCAGGA (6) 1.9 0.0019 Adult retinal TACACAACAC (3) 1.9 0.0019 ONL GACCTGAGTA (2) 9.6 0.0096 ONL AAAGCTGAAC (3) 3.8 0.0038 ONL CTGCACTTTT (3) 1.9 0.0019