Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.40
Cops3
COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
11
26572
Mm.40
AA414993
expressed sequence AA414993
11
103569
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 61 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCGGTTCCTC
(
2
)
8.2
0.0082
P8 Cb GC
GCCGTCAGCC (
4
)
8.2
0.0082
P8 Cb GC
GCTGGGTTAT (
3
)
1.6
0.0016
P8 Cb GC
TTGGCATCCT (
4
)
1.6
0.0016
P8 Cb GC
TTTTTGTTTC (
9
)
1.6
0.0016
Cb medulloblastoma
GCCGTCAGCC (
4
)
9.2
0.0092
Cb medulloblastoma
CCGGTTCCTC
(
2
)
4.6
0.0046
Cb medulloblastoma
TTGGCATCCT (
4
)
2.3
0.0023
P8 GC+1d culture
GCCGTCAGCC (
4
)
10.3
0.0103
P8 GC+1d culture
CCGGTTCCTC
(
2
)
8
0.008
P8 GC+1d culture
GCTGGGTTAT (
3
)
1.1
0.0011
P8 GC+1d culture
GGCTCACAAG
(
4
)
1.1
0.0011
P8 GC+1d culture
TTGGCATCCT (
4
)
1.1
0.0011
P8 GC+1d culture
TTTTTGTTTC (
9
)
1.1
0.0011
P8 GC+SHH+1d culture
CCGGTTCCTC
(
2
)
4.7
0.0047
P8 GC+SHH+1d culture
GCCGTCAGCC (
4
)
4.7
0.0047
P8 GC+SHH+1d culture
GCTGGGTTAT (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TTGGCATCCT (
4
)
1.2
0.0012
3T3 fibroblasts
CCGGTTCCTC
(
2
)
14
0.014
3T3 fibroblasts
GCCGTCAGCC (
4
)
3.5
0.0035
E15 cortex
CCGGTTCCTC
(
2
)
9.9
0.0099
E15 cortex
GCCGTCAGCC (
4
)
9.9
0.0099
P1 cortex
CCGGTTCCTC
(
2
)
9.1
0.0091
P1 cortex
TTTTTGTTTC (
9
)
4.5
0.0045
Hypothalamus
CCGGTTCCTC
(
2
)
5.4
0.0054
Hypothalamus
GCCGTCAGCC (
4
)
5.4
0.0054
Hypothalamus
TTTTTGTTTC (
9
)
1.8
0.0018
E12.5 retina
CCGGTTCCTC
(
2
)
7.5
0.0075
E12.5 retina
GCCGTCAGCC (
4
)
3.8
0.0038
E12.5 retina
TTGGCATCCT (
4
)
3.8
0.0038
E12.5 retina
TTCAAGAAAA (
4
)
1.9
0.0019
E14.5 retina
GCCGTCAGCC (
4
)
5.5
0.0055
E14.5 retina
TTGGCATCCT (
4
)
3.6
0.0036
E14.5 retina
GGCTCACAAG
(
4
)
1.8
0.0018
E16.5 retina
GCCGTCAGCC (
4
)
5.4
0.0054
E16.5 retina
CCGGTTCCTC
(
2
)
1.8
0.0018
E18.5 retina
GCCGTCAGCC (
4
)
7.3
0.0073
E18.5 retina
CCGGTTCCTC
(
2
)
3.6
0.0036
E18.5 retina
TTGGCATCCT (
4
)
3.6
0.0036
P0.5 retina
CCGGTTCCTC
(
2
)
2
0.002
P0.5 retina
TTGGCATCCT (
4
)
2
0.002
P2.5 retina
GCCGTCAGCC (
4
)
12.3
0.0123
P2.5 retina
CCGGTTCCTC
(
2
)
5.3
0.0053
P4.5 retina
GCCGTCAGCC (
4
)
11.9
0.0119
P4.5 retina
CCGGTTCCTC
(
2
)
7.9
0.0079
P4.5 retina
TTGGCATCCT (
4
)
7.9
0.0079
P6.5 retina
GCCGTCAGCC (
4
)
13.3
0.0133
P6.5 retina
CCGGTTCCTC
(
2
)
8.3
0.0083
P6.5 retina
GGCTCACAAG
(
4
)
1.7
0.0017
P6.5 retina
TTGGCATCCT (
4
)
1.7
0.0017
P10.5 crx- retina
CCGGTTCCTC
(
2
)
14.9
0.0149
P10.5 crx- retina
GCCGTCAGCC (
4
)
3.7
0.0037
P10.5 crx+ retina
GCCGTCAGCC (
4
)
15.4
0.0154
P10.5 crx+ retina
CCGGTTCCTC
(
2
)
13.5
0.0135
P10.5 crx+ retina
TTCAAGAAAA (
4
)
1.9
0.0019
P10.5 crx+ retina
TTGGCATCCT (
4
)
1.9
0.0019
Adult retinal
GCCGTCAGCC (
4
)
11.1
0.0111
Adult retinal
CCGGTTCCTC
(
2
)
5.6
0.0056
Adult retinal
GGCTCACAAG
(
4
)
1.9
0.0019
ONL
GCCGTCAGCC (
4
)
5.7
0.0057
ONL
CCGGTTCCTC
(
2
)
3.8
0.0038
