Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.400	Cox6b	cytochrome c oxidase, subunit VIb	7	7 10.0 cM	110323
Gene Ontology	cytochrome-c oxidase activity | electron transport | mitochondrion | mitochondrion | oxidoreductase activity | respiratory chain complex IV (sensu Eukarya)
Human Homolog	COX6B1[cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 108 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGCAACTAC (2) 68.5 0.0685 P8 Cb GC ATGCGACTAC 3.3 0.0033 P8 Cb GC GAGTTCAGCT (4) 3.3 0.0033 P8 Cb GC TAAACAAGCA (3) 3.3 0.0033 P8 Cb GC ATGCAACTAT 1.6 0.0016 P8 Cb GC GGCCTCAGCC (4) 1.6 0.0016 P8 Cb GC GGCTATGTGC (5) 1.6 0.0016 Cb medulloblastoma ATGCAACTAC (2) 134.1 0.1341 Cb medulloblastoma GAGTTCAGCT (4) 27.7 0.0277 Cb medulloblastoma ACACGGGACA (3) 6.9 0.0069 Cb medulloblastoma ATTCAGGGTC 2.3 0.0023 P8 GC+1d culture ATGCAACTAC (2) 108.4 0.1084 P8 GC+1d culture GAGTTCAGCT (4) 3.4 0.0034 P8 GC+1d culture GGCTATGTGC (5) 3.4 0.0034 P8 GC+1d culture TAAACAAGCA (3) 2.3 0.0023 P8 GC+1d culture ACGCAACTAC 1.1 0.0011 P8 GC+1d culture GGCCTCAGCC (4) 1.1 0.0011 P8 GC+1d culture GGTCTCAGCC (5) 1.1 0.0011 P8 GC+SHH+1d culture ATGCAACTAC (2) 103 0.103 P8 GC+SHH+1d culture GGCTATGTGC (5) 4.7 0.0047 P8 GC+SHH+1d culture GAGTTCAGCT (4) 2.3 0.0023 P8 GC+SHH+1d culture TAAACAAGCA (3) 2.3 0.0023 P8 GC+SHH+1d culture ACGCAACTAC 1.2 0.0012 P8 GC+SHH+1d culture ATTCAGGGTC 1.2 0.0012 P8 GC+SHH+1d culture GGCCTCAGCC (4) 1.2 0.0012 3T3 fibroblasts GGCCTCAGCC (4) 24.5 0.0245 3T3 fibroblasts ATGCAACTAC (2) 21 0.021 3T3 fibroblasts GGCTATGTGC (5) 14 0.014 3T3 fibroblasts GGTCTCAGCC (5) 7 0.007 E15 cortex ATGCAACTAC (2) 14.8 0.0148 E15 cortex GAGTTCAGCT (4) 14.8 0.0148 E15 cortex GGTCTCAGCC (5) 14.8 0.0148 E15 cortex GGCCTCAGCC (4) 4.9 0.0049 P1 cortex ATGCAACTAC (2) 36.4 0.0364 P1 cortex GAGTTCAGCT (4) 31.8 0.0318 P1 cortex TAAACAAGCA (3) 4.5 0.0045 Hypothalamus ATGCAACTAC (2) 215.5 0.2155 Hypothalamus ATTCAGGGTC 7.2 0.0072 Hypothalamus ACACGGGACA (3) 5.4 0.0054 Hypothalamus GAGTTCAGCT (4) 5.4 0.0054 Hypothalamus GGTCTCAGCC (5) 5.4 0.0054 Hypothalamus TAAACAAGCA (3) 3.6 0.0036 Hypothalamus ATGCAAACTA 1.8 0.0018 Hypothalamus ATGCAACTAT 1.8 0.0018 Hypothalamus GGCCTCAGCC (4) 1.8 0.0018 E12.5 retina ATGCAACTAC (2) 93.9 0.0939 E12.5 retina GGCTATGTGC (5) 5.6 0.0056 E12.5 retina TAAACAAGCA (3) 5.6 0.0056 E14.5 retina ATGCAACTAC (2) 158.5 0.1585 E14.5 retina ACACGGGACA (3) 1.8 0.0018 E14.5 retina ACGCAACTAC 1.8 0.0018 E14.5 retina ATGCAACTAT 1.8 0.0018 E14.5 retina GGCTATGTGC (5) 1.8 0.0018 E14.5 retina TAAACAAGCA (3) 1.8 0.0018 E16.5 retina ATGCAACTAC (2) 172.1 0.1721 E16.5 retina GGTCTCAGCC (5) 5.4 0.0054 E16.5 retina ACACGGGACA (3) 3.6 0.0036 E16.5 retina GAGTTCAGCT (4) 3.6 0.0036 E16.5 retina ATGCACCTAC (3) 1.8 0.0018 E16.5 retina GGCTATGTGC (5) 1.8 0.0018 E16.5 retina TAAACAAGCA (3) 1.8 0.0018 E18.5 retina ATGCAACTAC (2) 174.6 0.1746 E18.5 retina ATGCACCTAC (3) 1.8 0.0018 E18.5 retina ATTCAGGGTC 1.8 0.0018 E18.5 retina GAGTTCAGCT (4) 1.8 0.0018 E18.5 retina GGCTATGTGC (5) 1.8 0.0018 E18.5 retina TAAACAAGCA (3) 1.8 0.0018 P0.5 retina ATGCAACTAC (2) 64.8 0.0648 P0.5 retina GGCTATGTGC (5) 5.9 0.0059 P0.5 retina GAGTTCAGCT (4) 2 0.002 P0.5 retina GGCCTCAGCC (4) 2 0.002 P2.5 retina ATGCAACTAC (2) 77.4 0.0774 P2.5 retina ATTCAGGGTC 1.8 0.0018 P2.5 retina GCCACTTACC 1.8 0.0018 P4.5 retina ATGCAACTAC (2) 85.2 0.0852 P4.5 retina GGCTATGTGC (5) 4 0.004 P4.5 retina ACACGGGACA (3) 2 0.002 P4.5 retina ATGCACCTAC (3) 2 0.002 P4.5 retina GAGTTCAGCT (4) 2 0.002 P4.5 retina GGCCTCAGCC (4) 2 0.002 P4.5 retina GGTCTCAGCC (5) 2 0.002 P4.5 retina TAAACAAGCA (3) 2 0.002 P6.5 retina ATGCAACTAC (2) 105 0.105 P6.5 retina GGCTATGTGC (5) 3.3 0.0033 P6.5 retina ATGCAAACTA 1.7 0.0017 P6.5 retina TAAACAAGCA (3) 1.7 0.0017 P10.5 crx- retina ATGCAACTAC (2) 130 0.13 P10.5 crx- retina GGCCTCAGCC (4) 5.6 0.0056 P10.5 crx- retina GGCTATGTGC (5) 3.7 0.0037 P10.5 crx- retina ATTCAGGGTC 1.9 0.0019 P10.5 crx- retina GAGTTCAGCT (4) 1.9 0.0019 P10.5 crx- retina GGTCTCAGCC (5) 1.9 0.0019 P10.5 crx- retina TAAACAAGCA (3) 1.9 0.0019 P10.5 crx+ retina ATGCAACTAC (2) 90.4 0.0904 P10.5 crx+ retina GAGTTCAGCT (4) 1.9 0.0019 P10.5 crx+ retina GGCCTCAGCC (4) 1.9 0.0019 P10.5 crx+ retina GGCTATGTGC (5) 1.9 0.0019 P10.5 crx+ retina GGTCTCAGCC (5) 1.9 0.0019 Adult retinal ATGCAACTAC (2) 57.4 0.0574 Adult retinal GGCCTCAGCC (4) 7.4 0.0074 Adult retinal GGCTATGTGC (5) 3.7 0.0037 Adult retinal GCCACTTACC 1.9 0.0019 Adult retinal GGTCTCAGCC (5) 1.9 0.0019 Adult retinal TAAACAAGCA (3) 1.9 0.0019 ONL ATGCAACTAC (2) 32.6 0.0326 ONL TAAACAAGCA (3) 7.7 0.0077 ONL GCCACTTACC 3.8 0.0038 ONL ATGCAAACTA 1.9 0.0019