Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.40546	AI839402	expressed sequence AI839402	16		106263
Mm.40546	Itsn1	intersectin 1 (SH3 domain protein 1A)	16		16443
Gene Ontology	calcium ion binding | endocytosis | lamellipodium | protein binding | small GTPase mediated signal transduction
Human Homolog	ITSN1[intersectin 1 (SH3 domain protein)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 112 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC ATCAAGGGTG (4) 9.8 0.0098 P8 Cb GC GGGCTGCTCA (7) 9.8 0.0098 P8 Cb GC TGTGGAAGTG (6) 8.2 0.0082 P8 Cb GC GATATGAATG (4) 1.6 0.0016 P8 Cb GC TGATCGAAAT (2) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GGGCTGCTCA (7) 6.9 0.0069 Cb medulloblastoma TGTGGAAGTG (6) 4.6 0.0046 Cb medulloblastoma GCTTCTAGAG (2) 2.3 0.0023 Cb medulloblastoma TATTCAGTTG (2) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GGGCTGCTCA (7) 9.1 0.0091 P8 GC+1d culture TGTGGAAGTG (6) 5.7 0.0057 P8 GC+1d culture TGATCGAAAT (2) 2.3 0.0023 P8 GC+1d culture GATATGAATG (4) 1.1 0.0011 P8 GC+1d culture GCTTCTAGAG (2) 1.1 0.0011 P8 GC+1d culture TCTCATTTTA (3) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GGGCTGCTCA (7) 11.7 0.0117 P8 GC+SHH+1d culture GATATGAATG (4) 3.5 0.0035 P8 GC+SHH+1d culture CATTTAACTG (3) 1.2 0.0012 P8 GC+SHH+1d culture TATTCAGTTG (2) 1.2 0.0012 P8 GC+SHH+1d culture TGGTGGTTTG (7) 1.2 0.0012 P8 GC+SHH+1d culture TGTGGAAGTG (6) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GGGCTGCTCA (7) 7 0.007 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GGGCTGCTCA (7) 24.7 0.0247 E15 cortex TATTCAGTTG (2) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex CATTTAACTG (3) 4.5 0.0045 P1 cortex GGGCTGCTCA (7) 4.5 0.0045 P1 cortex TGATCGAAAT (2) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TCACATCCAA (5) 5.4 0.0054 Hypothalamus TGTGGAAGTG (6) 5.4 0.0054 Hypothalamus ATCAAGGGTG (4) 1.8 0.0018 Hypothalamus GGGCTGCTCA (7) 1.8 0.0018 Hypothalamus TATTCAGTTG (2) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GGGCTGCTCA (7) 20.7 0.0207 E12.5 retina GAAAGAGCAA (2) 3.8 0.0038 E12.5 retina GATATGAATG (4) 3.8 0.0038 E12.5 retina ATCAAGGGTG (4) 1.9 0.0019 E12.5 retina GCTTCTAGAG (2) 1.9 0.0019 E12.5 retina TGTGGAAGTG (6) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GGGCTGCTCA (7) 12.8 0.0128 E14.5 retina GATATGAATG (4) 5.5 0.0055 E14.5 retina GAAAGAGCAA (2) 3.6 0.0036 E14.5 retina ATCAAGGGTG (4) 1.8 0.0018 E14.5 retina CGCGACAGGT (3) 1.8 0.0018 E14.5 retina TGGTGGTTTG (7) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina ATCAAGGGTG (4) 10.9 0.0109 E16.5 retina GGGCTGCTCA (7) 9.1 0.0091 E16.5 retina GATATGAATG (4) 3.6 0.0036 E16.5 retina TGTGGAAGTG (6) 3.6 0.0036 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina TGGTGGTTTG (7) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina ATCAAGGGTG (4) 1.8 0.0018 E18.5 retina GAAAGAGCAA (2) 1.8 0.0018 E18.5 retina GGGCTGCTCA (7) 1.8 0.0018 E18.5 retina TGGTGGTTTG (7) 1.8 0.0018 E18.5 retina TGTGGAAGTG (6) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina GGGCTGCTCA (7) 11.8 0.0118 P0.5 retina TGTGGAAGTG (6) 11.8 0.0118 P0.5 retina ATCAAGGGTG (4) 2 0.002 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina TATTCAGTTG (2) 2 0.002 P0.5 retina TCTCATTTTA (3) 2 0.002 P0.5 retina TGGTGGTTTG (7) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GGGCTGCTCA (7) 8.8 0.0088 P2.5 retina TGTGGAAGTG (6) 7 0.007 P2.5 retina GATATGAATG (4) 3.5 0.0035 P2.5 retina ATCAAGGGTG (4) 1.8 0.0018 P2.5 retina TCACATCCAA (5) 1.8 0.0018 P2.5 retina TGGTGGTTTG (7) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GATATGAATG (4) 4 0.004 P4.5 retina TGTGGAAGTG (6) 4 0.004 P4.5 retina GGGCTGCTCA (7) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TGTGGAAGTG (6) 8.3 0.0083 P6.5 retina GATATGAATG (4) 5 0.005 P6.5 retina GGGCTGCTCA (7) 5 0.005 P6.5 retina TCACATCCAA (5) 1.7 0.0017 P6.5 retina TCTCATTTTA (3) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina TGTGGAAGTG (6) 9.3 0.0093 P10.5 crx- retina GGGCTGCTCA (7) 5.6 0.0056 P10.5 crx- retina ATCAAGGGTG (4) 3.7 0.0037 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GGGCTGCTCA (7) 5.8 0.0058 P10.5 crx+ retina TATTCAGTTG (2) 3.8 0.0038 P10.5 crx+ retina TGTGGAAGTG (6) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal TGTGGAAGTG (6) 5.6 0.0056 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal CGCGACAGGT (3) 3.7 0.0037 Adult retinal TGGTGGTTTG (7) 3.7 0.0037 Adult retinal CATTTAACTG (3) 1.9 0.0019 Adult retinal GAAAGAGCAA (2) 1.9 0.0019 Adult retinal GGGCTGCTCA (7) 1.9 0.0019 Adult retinal TCTCATTTTA (3) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GAAAGAGCAA (2) 19.2 0.0192 ONL GATATGAATG (4) 1.9 0.0019