Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.41187
1200009O22Rik
RIKEN cDNA 1200009O22 gene
6
66873
Human Homolog
KIAA0644[KIAA0644 gene product]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 90 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CATTGCCTTC (
3
)
17.9
0.0179
P8 Cb GC
TTTGAGGTCT (
2
)
11.4
0.0114
P8 Cb GC
GGAAAAAAAA (
69
)
8.2
0.0082
P8 Cb GC
TGCATTCAAC
(
2
)
4.9
0.0049
P8 Cb GC
CCTTCTCAGA (
3
)
3.3
0.0033
P8 Cb GC
ACCAGAACGC
(
3
)
1.6
0.0016
P8 Cb GC
CACAGCACAG
(
4
)
1.6
0.0016
P8 Cb GC
GGAAAAAATC (
6
)
1.6
0.0016
Cb medulloblastoma
GGAAAAAAAA (
69
)
41.6
0.0416
Cb medulloblastoma
CCTTCTCAGA (
3
)
4.6
0.0046
Cb medulloblastoma
TTTGAGGTCT (
2
)
4.6
0.0046
Cb medulloblastoma
CATTGCCTTC (
3
)
2.3
0.0023
P8 GC+1d culture
TTTGAGGTCT (
2
)
9.1
0.0091
P8 GC+1d culture
CATTGCCTTC (
3
)
8
0.008
P8 GC+1d culture
GGAAAAAAAA (
69
)
5.7
0.0057
P8 GC+1d culture
CCTTCTCAGA (
3
)
2.3
0.0023
P8 GC+1d culture
TGCATTCAAC
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
TTTGAGGTCT (
2
)
9.4
0.0094
P8 GC+SHH+1d culture
CATTGCCTTC (
3
)
8.2
0.0082
P8 GC+SHH+1d culture
GGAAAAAAAA (
69
)
7
0.007
P8 GC+SHH+1d culture
CCTTCTCAGA (
3
)
3.5
0.0035
P8 GC+SHH+1d culture
GGAAAAAATC (
6
)
1.2
0.0012
P8 GC+SHH+1d culture
TGAAGTGATC (
3
)
1.2
0.0012
3T3 fibroblasts
CCTTCTCAGA (
3
)
3.5
0.0035
E15 cortex
CCTTCTCAGA (
3
)
9.9
0.0099
E15 cortex
GGAAAAAAAA (
69
)
9.9
0.0099
E15 cortex
CATTGCCTTC (
3
)
4.9
0.0049
E15 cortex
GGTCCCTTCC (
8
)
4.9
0.0049
P1 cortex
CCTTCTCAGA (
3
)
9.1
0.0091
P1 cortex
GGAAAAAAAA (
69
)
4.5
0.0045
Hypothalamus
GGAAAAAAAA (
69
)
14.5
0.0145
Hypothalamus
CATTGCCTTC (
3
)
5.4
0.0054
Hypothalamus
ACCAGAACGC
(
3
)
1.8
0.0018
Hypothalamus
CCTTCTCAGA (
3
)
1.8
0.0018
Hypothalamus
TTTGAGGTCT (
2
)
1.8
0.0018
E12.5 retina
CATTGCCTTC (
3
)
5.6
0.0056
E12.5 retina
CACAGCACAG
(
4
)
1.9
0.0019
E12.5 retina
GGAAAAAAAA (
69
)
1.9
0.0019
E14.5 retina
GGAAAAAAAA (
69
)
10.9
0.0109
E14.5 retina
CATTGCCTTC (
3
)
5.5
0.0055
E14.5 retina
TTTGAGGTCT (
2
)
1.8
0.0018
E16.5 retina
CATTGCCTTC (
3
)
5.4
0.0054
E16.5 retina
TTTGAGGTCT (
2
)
3.6
0.0036
E16.5 retina
CCTTCTCAGA (
3
)
1.8
0.0018
E16.5 retina
GGAAAAAAAA (
69
)
1.8
0.0018
E16.5 retina
GGAAAAAATC (
6
)
1.8
0.0018
E16.5 retina
GGTCCCTTCC (
8
)
1.8
0.0018
E18.5 retina
GGAAAAAAAA (
69
)
16.4
0.0164
E18.5 retina
CATTGCCTTC (
3
)
7.3
0.0073
E18.5 retina
GGAAAAAAAT (
11
)
1.8
0.0018
E18.5 retina
TGAAGTGATC (
3
)
1.8
0.0018
P0.5 retina
GGAAAAAAAA (
69
)
13.7
0.0137
P0.5 retina
CATTGCCTTC (
3
)
5.9
0.0059
P0.5 retina
ACCAGAACGC
(
3
)
3.9
0.0039
P0.5 retina
CCTTCTCAGA (
3
)
2
0.002
P2.5 retina
TTTGAGGTCT (
2
)
8.8
0.0088
P2.5 retina
CATTGCCTTC (
3
)
7
0.007
P2.5 retina
GGAAAAAAAA (
69
)
7
0.007
P2.5 retina
CACAGCACAG
(
4
)
3.5
0.0035
P2.5 retina
CCTTCTCAGA (
3
)
3.5
0.0035
P2.5 retina
GGAAAAAAAT (
11
)
1.8
0.0018
P2.5 retina
TGAAGTGATC (
3
)
1.8
0.0018
P4.5 retina
GGAAAAAAAA (
69
)
13.9
0.0139
P4.5 retina
CATTGCCTTC (
3
)
11.9
0.0119
P4.5 retina
TTTGAGGTCT (
2
)
4
0.004
P4.5 retina
CACAGCACAG
(
4
)
2
0.002
P6.5 retina
GGAAAAAAAA (
69
)
13.3
0.0133
P6.5 retina
CATTGCCTTC (
3
)
11.7
0.0117
P6.5 retina
TTTGAGGTCT (
2
)
6.7
0.0067
P6.5 retina
CACAGCACAG
(
4
)
3.3
0.0033
P6.5 retina
GGTCCCTTCC (
8
)
3.3
0.0033
P6.5 retina
GGAAAAAAAT (
11
)
1.7
0.0017
P10.5 crx- retina
CACAGCACAG
(
4
)
7.4
0.0074
P10.5 crx- retina
CCTTCTCAGA (
3
)
5.6
0.0056
P10.5 crx- retina
GGAAAAAAAA (
69
)
3.7
0.0037
P10.5 crx- retina
CATTGCCTTC (
3
)
1.9
0.0019
P10.5 crx- retina
TGCATTCAAC
(
2
)
1.9
0.0019
P10.5 crx- retina
TTTGAGGTCT (
2
)
1.9
0.0019
P10.5 crx+ retina
GGAAAAAAAA (
69
)
15.4
0.0154
P10.5 crx+ retina
CATTGCCTTC (
3
)
11.5
0.0115
P10.5 crx+ retina
CCTTCTCAGA (
3
)
3.8
0.0038
P10.5 crx+ retina
TTTGAGGTCT (
2
)
3.8
0.0038
P10.5 crx+ retina
CACAGCACAG
(
4
)
1.9
0.0019
Adult retinal
CATTGCCTTC (
3
)
11.1
0.0111
Adult retinal
GGAAAAAAAA (
69
)
5.6
0.0056
Adult retinal
CCTTCTCAGA (
3
)
1.9
0.0019
Adult retinal
TTTGAGGTCT (
2
)
1.9
0.0019
ONL
GGAAAAAAAA (
69
)
17.2
0.0172
ONL
CATTGCCTTC (
3
)
15.3
0.0153
ONL
GGAAAAAAAT (
11
)
1.9
0.0019
