Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41220	0710001D07Rik	RIKEN cDNA 0710001D07 gene	17		67679
Mm.41220	Btbd9	BTB (POZ) domain containing 9	17		224671
Gene Ontology	cell adhesion | protein binding
Human Homolog	BTBD9[BTB (POZ) domain containing 9]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

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SAGE Tags

Total 142 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GTGGCTTACA (19) 11.4 0.0114 P8 Cb GC CCTTTGATCC (22) 3.3 0.0033 P8 Cb GC ATCCAAGTCA (3) 1.6 0.0016 P8 Cb GC ATTTAAAAAA (10) 1.6 0.0016 P8 Cb GC GTAGATGTGG (4) 1.6 0.0016 P8 Cb GC TGGAACGATA (2) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GTGGCTTACA (19) 23.1 0.0231 Cb medulloblastoma ATTTAAAAAA (10) 2.3 0.0023 Cb medulloblastoma ATTTAAAAGA (8) 2.3 0.0023 Cb medulloblastoma CCTTTGATCC (22) 2.3 0.0023 Cb medulloblastoma TGGAACGATA (2) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GTGGCTTACA (19) 30.8 0.0308 P8 GC+1d culture TGGAACGATA (2) 6.8 0.0068 P8 GC+1d culture ATCCAAGTCA (3) 4.6 0.0046 P8 GC+1d culture ATTTAAAAAA (10) 1.1 0.0011 P8 GC+1d culture CCTTTGATCC (22) 1.1 0.0011 P8 GC+1d culture CTCCTCAGAT (2) 1.1 0.0011 P8 GC+1d culture TGCACATTTT (3) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GTGGCTTACA (19) 36.3 0.0363 P8 GC+SHH+1d culture ATCCAAGTCA (3) 2.3 0.0023 P8 GC+SHH+1d culture GGGGGGAAAG (8) 2.3 0.0023 P8 GC+SHH+1d culture TGGAACGATA (2) 2.3 0.0023 P8 GC+SHH+1d culture ACCTAAAAAA (6) 1.2 0.0012 P8 GC+SHH+1d culture ATTTAAAAAA (10) 1.2 0.0012 P8 GC+SHH+1d culture CCTTTGATCC (22) 1.2 0.0012 P8 GC+SHH+1d culture CTCCTCAGAT (2) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GTGGCTTACA (19) 35 0.035 3T3 fibroblasts ATCCAAGTCA (3) 3.5 0.0035 3T3 fibroblasts GGGGGGAAAG (8) 3.5 0.0035 3T3 fibroblasts GTAGATGTGG (4) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GTGGCTTACA (19) 19.8 0.0198 E15 cortex GGGGGGAAAG (8) 9.9 0.0099 E15 cortex ATTACAGCCA (5) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GTGGCTTACA (19) 22.7 0.0227 P1 cortex CCTTTGATCC (22) 13.6 0.0136 P1 cortex ATTTAAAAAA (10) 9.1 0.0091 P1 cortex GTAGATGTGG (4) 9.1 0.0091 P1 cortex ATCCAAGTCA (3) 4.5 0.0045 P1 cortex ATTACAGCCA (5) 4.5 0.0045 P1 cortex GGAAGTCCTC (5) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GTGGCTTACA (19) 23.5 0.0235 Hypothalamus ATTACAGCCA (5) 1.8 0.0018 Hypothalamus ATTTAAAAAA (10) 1.8 0.0018 Hypothalamus GTAGATGTGG (4) 1.8 0.0018 Hypothalamus TGGAACGATA (2) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GTGGCTTACA (19) 43.2 0.0432 E12.5 retina TGGAACGATA (2) 7.5 0.0075 E12.5 retina CCTTTGATCC (22) 5.6 0.0056 E12.5 retina ATCCAAGTCA (3) 3.8 0.0038 E12.5 retina ATTTAAAAAA (10) 1.9 0.0019 E12.5 retina ATTTAAAAGA (8) 1.9 0.0019 E12.5 retina GGGGGGAAAG (8) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GTGGCTTACA (19) 51 0.051 E14.5 retina ATTTAAAAAA (10) 3.6 0.0036 E14.5 retina TGGAACGATA (2) 3.6 0.0036 E14.5 retina CCTTTGATCC (22) 1.8 0.0018 E14.5 retina GGGGGGAAAG (8) 1.8 0.0018 E14.5 retina GTAGATGTGG (4) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GTGGCTTACA (19) 50.7 0.0507 E16.5 retina GGAAGTCCTC (5) 5.4 0.0054 E16.5 retina CCTTTGATCC (22) 3.6 0.0036 E16.5 retina TCATCCGTAA (5) 3.6 0.0036 E16.5 retina TGGAACGATA (2) 3.6 0.0036 E16.5 retina TTTCCAGGGG (3) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GTGGCTTACA (19) 40 0.04 E18.5 retina TGGAACGATA (2) 7.3 0.0073 E18.5 retina TTTCCAGGGG (3) 5.5 0.0055 E18.5 retina GGGGGGAAAG (8) 3.6 0.0036 E18.5 retina GTAGATGTGG (4) 3.6 0.0036 E18.5 retina ACCTAAAAAA (6) 1.8 0.0018 E18.5 retina ATTTAAAAAA (10) 1.8 0.0018 E18.5 retina CCTTTGATCC (22) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina GTGGCTTACA (19) 45.1 0.0451 P0.5 retina GTAGATGTGG (4) 3.9 0.0039 P0.5 retina ATCCAAGTCA (3) 2 0.002 P0.5 retina CCTTTGATCC (22) 2 0.002 P0.5 retina GGAAGTCCTC (5) 2 0.002 P0.5 retina TGCACATTTT (3) 2 0.002 P0.5 retina TTTCCAGGGG (3) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GTGGCTTACA (19) 21.1 0.0211 P2.5 retina GTAGATGTGG (4) 8.8 0.0088 P2.5 retina CCTTTGATCC (22) 7 0.007 P2.5 retina CTCCTCAGAT (2) 3.5 0.0035 P2.5 retina GGGGGGAAAG (8) 1.8 0.0018 P2.5 retina TGGAACGATA (2) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GTGGCTTACA (19) 25.8 0.0258 P4.5 retina CCTTTGATCC (22) 5.9 0.0059 P4.5 retina TGGAACGATA (2) 5.9 0.0059 P4.5 retina ATTTAAAAAA (10) 4 0.004 P4.5 retina ATTTAAAAGA (8) 4 0.004 P4.5 retina GTAGATGTGG (4) 4 0.004 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GTGGCTTACA (19) 35 0.035 P6.5 retina GTAGATGTGG (4) 6.7 0.0067 P6.5 retina CCTTTGATCC (22) 3.3 0.0033 P6.5 retina GGGGGGAAAG (8) 3.3 0.0033 P6.5 retina TGGAACGATA (2) 3.3 0.0033 P6.5 retina ATCCAAGTCA (3) 1.7 0.0017 P6.5 retina ATTTAAAAAA (10) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GTGGCTTACA (19) 24.2 0.0242 P10.5 crx- retina ATCCAAGTCA (3) 5.6 0.0056 P10.5 crx- retina ATTTAAAAGA (8) 3.7 0.0037 P10.5 crx- retina GTAGATGTGG (4) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GTGGCTTACA (19) 32.7 0.0327 P10.5 crx+ retina TGGAACGATA (2) 13.5 0.0135 P10.5 crx+ retina CCTTTGATCC (22) 5.8 0.0058 P10.5 crx+ retina ATTTAAAAAA (10) 1.9 0.0019 P10.5 crx+ retina GGGGGGAAAG (8) 1.9 0.0019 P10.5 crx+ retina GTAGATGTGG (4) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GTGGCTTACA (19) 18.5 0.0185 Adult retinal ATCCAAGTCA (3) 7.4 0.0074 Adult retinal TGGAACGATA (2) 7.4 0.0074 Adult retinal GGAAGTCCTC (5) 3.7 0.0037 Adult retinal GTAGATGTGG (4) 1.9 0.0019 Adult retinal TCATCCGTAA (5) 1.9 0.0019 Adult retinal TGCACATTTT (3) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GTGGCTTACA (19) 30.6 0.0306 ONL TGGAACGATA (2) 7.7 0.0077 ONL CCTTTGATCC (22) 5.7 0.0057 ONL GTAGATGTGG (4) 5.7 0.0057 ONL ATTACAGCCA (5) 3.8 0.0038 ONL ATTTAAAAAA (10) 1.9 0.0019 ONL TGCACATTTT (3) 1.9 0.0019