Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.43415	Cox6a1	cytochrome c oxidase, subunit VI a, polypeptide 1	5	5 60.0 cM	12861
Gene Ontology	cytochrome-c oxidase activity | electron transport | inner membrane | integral to membrane | mitochondrial membrane | mitochondrion | oxidoreductase activity | respiratory chain complex IV (sensu Eukarya)
Human Homolog	COX6A1[cytochrome c oxidase subunit VIa polypeptide 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGAACCCACT 35.9 0.0359 P8 Cb GC CTCAACTTGT (5) 8.2 0.0082 P8 Cb GC GCCTCCCCTT (4) 6.5 0.0065 P8 Cb GC CTCACTCCCA 1.6 0.0016 P8 Cb GC CTGAACACCT (3) 1.6 0.0016 P8 Cb GC GAAATAAAAT (4) 1.6 0.0016 P8 Cb GC TCGAGTGGCG (3) 1.6 0.0016 P8 Cb GC TGTGGACCAC (5) 1.6 0.0016 Cb medulloblastoma TGAACCCACT 67.1 0.0671 Cb medulloblastoma GAAATAAAAT (4) 9.2 0.0092 Cb medulloblastoma CTCACTCCCA 2.3 0.0023 Cb medulloblastoma TCGAGTGGCG (3) 2.3 0.0023 Cb medulloblastoma TGACACCACT 2.3 0.0023 P8 GC+1d culture TGAACCCACT 40 0.04 P8 GC+1d culture GCCTCCCCTT (4) 20.5 0.0205 P8 GC+1d culture CTCAACTTGT (5) 1.1 0.0011 P8 GC+1d culture CTGAACACCT (3) 1.1 0.0011 P8 GC+1d culture GGCCGCCTCA (3) 1.1 0.0011 P8 GC+SHH+1d culture TGAACCCACT 41 0.041 P8 GC+SHH+1d culture GCCTCCCCTT (4) 24.6 0.0246 P8 GC+SHH+1d culture CTCAACTTGT (5) 9.4 0.0094 P8 GC+SHH+1d culture CTCACTCCCA 2.3 0.0023 P8 GC+SHH+1d culture GAAATAAAAT (4) 1.2 0.0012 P8 GC+SHH+1d culture GGCCGCCTCA (3) 1.2 0.0012 P8 GC+SHH+1d culture TGTGGACCAC (5) 1.2 0.0012 3T3 fibroblasts TGAACCCACT 31.5 0.0315 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts GCCTCCCCTT (4) 7 0.007 3T3 fibroblasts TGACACCACT 7 0.007 3T3 fibroblasts CTCAACGTGT 3.5 0.0035 3T3 fibroblasts CTGAACACCT (3) 3.5 0.0035 3T3 fibroblasts TGAACCCAAT 3.5 0.0035 E15 cortex GCCTCCCCTT (4) 14.8 0.0148 E15 cortex AGGGTTGTGG 9.9 0.0099 E15 cortex TGAACCCACT 9.9 0.0099 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex TGAACCCACT 27.3 0.0273 P1 cortex GCCTCCCCTT (4) 4.5 0.0045 P1 cortex TGAACCCAAT 4.5 0.0045 Hypothalamus TGAACCCACT 36.2 0.0362 Hypothalamus CTCACTCCCA 3.6 0.0036 Hypothalamus GGCCGCCTCA (3) 3.6 0.0036 Hypothalamus CTCAACGTGT 1.8 0.0018 Hypothalamus TCGAGTGGCG (3) 1.8 0.0018 E12.5 retina GAAATAAAAT (4) 9.4 0.0094 E12.5 retina TGAACCCACT 9.4 0.0094 E12.5 retina GCCTCCCCTT (4) 3.8 0.0038 E14.5 retina TGAACCCACT 12.8 0.0128 E14.5 retina CTCAACTTGT (5) 9.1 0.0091 E14.5 retina GAAATAAAAT (4) 5.5 0.0055 E14.5 retina GGCCGCCTCA (3) 3.6 0.0036 E16.5 retina TGAACCCACT 12.7 0.0127 E16.5 retina GCCTCCCCTT (4) 7.2 0.0072 E16.5 retina GAAATAAAAT (4) 3.6 0.0036 E16.5 retina GGCCGCCTCA (3) 3.6 0.0036 E16.5 retina CTCAACTTGT (5) 1.8 0.0018 E16.5 retina TGAACCCAAT 1.8 0.0018 E18.5 retina TGAACCCACT 18.2 0.0182 E18.5 retina GAAATAAAAT (4) 9.1 0.0091 E18.5 retina AGGGTTGTGG 5.5 0.0055 E18.5 retina CTCAACTTGT (5) 1.8 0.0018 P0.5 retina TGAACCCACT 21.6 0.0216 P0.5 retina GCCTCCCCTT (4) 9.8 0.0098 P0.5 retina CTGAACACCT (3) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AGGGTTGTGG 2 0.002 P0.5 retina GGCCGCCTCA (3) 2 0.002 P2.5 retina TGAACCCACT 12.3 0.0123 P2.5 retina CTCAACTTGT (5) 1.8 0.0018 P2.5 retina GAAATAAAAT (4) 1.8 0.0018 P2.5 retina GGCCGCCTCA (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGCATAAGGA 1.8 0.0018 P4.5 retina TGAACCCACT 19.8 0.0198 P4.5 retina GAAATAAAAT (4) 15.9 0.0159 P4.5 retina GCCTCCCCTT (4) 4 0.004 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TGACACCACT 2 0.002 P6.5 retina TGAACCCACT 31.7 0.0317 P6.5 retina GCCTCCCCTT (4) 5 0.005 P6.5 retina AGGGTTGTGG 3.3 0.0033 P6.5 retina GAAATAAAAT (4) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina CTCAACGTGT 1.7 0.0017 P10.5 crx- retina TGAACCCACT 31.6 0.0316 P10.5 crx- retina GAAATAAAAT (4) 1.9 0.0019 P10.5 crx- retina GCCTCCCCTT (4) 1.9 0.0019 P10.5 crx- retina TGACACCACT 1.9 0.0019 P10.5 crx+ retina TGAACCCACT 53.8 0.0538 P10.5 crx+ retina GAAATAAAAT (4) 3.8 0.0038 P10.5 crx+ retina CTCACTCCCA 1.9 0.0019 P10.5 crx+ retina GCCTCCCCTT (4) 1.9 0.0019 P10.5 crx+ retina TGCATAAGGA 1.9 0.0019 P10.5 crx+ retina TGTGGACCAC (5) 1.9 0.0019 Adult retinal TGAACCCACT 27.8 0.0278 Adult retinal GAAATAAAAT (4) 1.9 0.0019 Adult retinal GGCCGCCTCA (3) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL TGAACCCACT 30.6 0.0306 ONL GTCATAGCTG (590) 5.7 0.0057 ONL CTCACTCCCA 1.9 0.0019 ONL TGCATAAGGA 1.9 0.0019