Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4352	Col18a1	procollagen, type XVIII, alpha 1	10	10 41.3 cM	12822
Gene Ontology	angiogenesis | angiogenesis | basement membrane | cell adhesion | collagen | cytoplasm | development | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | membrane | phosphate transport | positive regulation of apoptosis | positive regulation of cell migration | positive regulation of cell proliferation | protein binding | structural molecule activity | transmembrane receptor activity
Human Homolog	COL18A1[collagen, type XVIII, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 44 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGAACTTTG (3) 4.9 0.0049 P8 Cb GC GCCTCCTGGG (10) 4.9 0.0049 P8 Cb GC AAGCACTTGT (2) 1.6 0.0016 P8 Cb GC AGGGCAGTCC (3) 1.6 0.0016 Cb medulloblastoma AAAGGACTTG (6) 2.3 0.0023 Cb medulloblastoma AAGCACTTGT (2) 2.3 0.0023 Cb medulloblastoma CAGAACTTTG (3) 2.3 0.0023 P8 GC+1d culture GCCTCCTGGG (10) 9.1 0.0091 P8 GC+1d culture CAGAACTTTG (3) 3.4 0.0034 P8 GC+1d culture AAGGACTTGT 2.3 0.0023 P8 GC+1d culture AAGCACTTGT (2) 1.1 0.0011 P8 GC+1d culture AGGGCAGTCC (3) 1.1 0.0011 P8 GC+SHH+1d culture GCCTCCTGGG (10) 8.2 0.0082 P8 GC+SHH+1d culture AAGCACTTGT (2) 3.5 0.0035 P8 GC+SHH+1d culture CAGAACTTTG (3) 3.5 0.0035 P8 GC+SHH+1d culture GCCTCTGTCT (2) 1.2 0.0012 3T3 fibroblasts GCCTCCTGGG (10) 3.5 0.0035 E15 cortex CAGAACTTTG (3) 4.9 0.0049 E15 cortex GCCTCCTGGG (10) 4.9 0.0049 E12.5 retina GCCTCCTGGG (10) 11.3 0.0113 E12.5 retina AAGCACTTGT (2) 3.8 0.0038 E14.5 retina GCCTCCTGGG (10) 10.9 0.0109 E14.5 retina AAGCACTTGT (2) 1.8 0.0018 E14.5 retina CAGAACTTTG (3) 1.8 0.0018 E16.5 retina GCCTCCTGGG (10) 7.2 0.0072 E16.5 retina AAGCACTTGT (2) 1.8 0.0018 E18.5 retina AAGCACTTGT (2) 1.8 0.0018 P0.5 retina GCCTCCTGGG (10) 3.9 0.0039 P0.5 retina AAAGGACTTG (6) 2 0.002 P0.5 retina AAGGACTTGT 2 0.002 P2.5 retina CAGAACTTTG (3) 1.8 0.0018 P2.5 retina GCCTCCTGGG (10) 1.8 0.0018 P4.5 retina AGGGCAGTCC (3) 2 0.002 P6.5 retina GCCTCCTGGG (10) 5 0.005 P6.5 retina AAGCACTTGT (2) 1.7 0.0017 P6.5 retina AAGTGCTGCT (4) 1.7 0.0017 P10.5 crx- retina GCCTCCTGGG (10) 11.1 0.0111 P10.5 crx+ retina GCCTCCTGGG (10) 5.8 0.0058 P10.5 crx+ retina AAAGGACTTG (6) 1.9 0.0019 P10.5 crx+ retina GCCTCTGTCT (2) 1.9 0.0019 Adult retinal AAGTGCTGCT (4) 5.6 0.0056 Adult retinal GCCTCCTGGG (10) 5.6 0.0056 Adult retinal GCCTCTGTCT (2) 1.9 0.0019 ONL GCCTCCTGGG (10) 1.9 0.0019