Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4521	Traf4	Tnf receptor associated factor 4	11		22032
Gene Ontology	apoptosis | development | nucleus | protein ubiquitination | receptor activity | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	TRAF4[TNF receptor-associated factor 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 34 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTGATGCC 3.3 0.0033 P8 Cb GC TGTGTGATGT (5) 3.3 0.0033 Cb medulloblastoma TGTGTGATGT (5) 2.3 0.0023 P8 GC+1d culture TGTGTGATGT (5) 8 0.008 P8 GC+1d culture TTTGGCCTGC (3) 3.4 0.0034 P8 GC+1d culture CCTTGATGCC 2.3 0.0023 P8 GC+SHH+1d culture TGTGTGATGT (5) 2.3 0.0023 P8 GC+SHH+1d culture CCTTGATGCC 1.2 0.0012 P8 GC+SHH+1d culture GCGCACCTCC (3) 1.2 0.0012 P8 GC+SHH+1d culture TTTGGCCTGC (3) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex TGTGTGATGT (5) 14.8 0.0148 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex TGTGTGATGT (5) 13.6 0.0136 Hypothalamus GCGCACCTCC (3) 1.8 0.0018 E12.5 retina CCTTGATGCC 3.8 0.0038 E12.5 retina TGTGTGATGT (5) 3.8 0.0038 E14.5 retina TTTGGCCTGC (3) 1.8 0.0018 E16.5 retina CCTTGATGCC 3.6 0.0036 P0.5 retina TGTGTGATGT (5) 5.9 0.0059 P0.5 retina CCTTGATGCC 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TGTGTGATGT (5) 1.7 0.0017 P10.5 crx- retina TGTGTGATGT (5) 1.9 0.0019 P10.5 crx+ retina GCGCACCTCC (3) 1.9 0.0019 P10.5 crx+ retina TGTGTGATGT (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TGTGTGATGT (5) 1.9 0.0019 Adult retinal TTTGGCCTGC (3) 1.9 0.0019 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TTTGGCCTGC (3) 1.9 0.0019