Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.45645	2010015M23Rik	RIKEN cDNA 2010015M23 gene	11		72087
Mm.45645	5730507C05Rik	RIKEN cDNA 5730507C05 gene	11		70633
Mm.45645	Sfrs1	splicing factor, arginine/serine-rich 1 (ASF/SF2)	11	11 49.0 cM	110809
Gene Ontology	mRNA processing | mRNA splice site selection | mRNA splice site selection | nuclear mRNA splicing, via spliceosome | nucleic acid binding | nucleus | pre-mRNA splicing factor activity | protein targeting | RNA binding | RNA binding | spliceosome complex
Human Homolog	SFRS1[splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 155 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGTGGATTC (4) 106 0.106 P8 Cb GC GAGCGGGATC (4) 27.7 0.0277 P8 Cb GC GATCCCAAAT (5) 8.2 0.0082 P8 Cb GC GCGGCGGCGG (24) 6.5 0.0065 P8 Cb GC GCCCTCTGGG (7) 3.3 0.0033 P8 Cb GC AATCCTGGTA (3) 1.6 0.0016 P8 Cb GC AGTCAATTAT (3) 1.6 0.0016 P8 Cb GC CAAATTTCTT (3) 1.6 0.0016 P8 Cb GC CGTGAGGCAG (3) 1.6 0.0016 P8 Cb GC CTTTTGTAGG (3) 1.6 0.0016 P8 Cb GC GGGTGGGGGA (14) 1.6 0.0016 P8 Cb GC GTTGTCCTTT (3) 1.6 0.0016 P8 Cb GC TATATATTTG (5) 1.6 0.0016 Cb medulloblastoma GAGTGGATTC (4) 27.7 0.0277 Cb medulloblastoma GAGCGGGATC (4) 9.2 0.0092 Cb medulloblastoma GCGGCGGCGG (24) 4.6 0.0046 Cb medulloblastoma GAGGCCAATG (6) 2.3 0.0023 Cb medulloblastoma GATCCCAAAT (5) 2.3 0.0023 Cb medulloblastoma GCCCTCTGGG (7) 2.3 0.0023 P8 GC+1d culture GAGTGGATTC (4) 147.3 0.1473 P8 GC+1d culture GAGCGGGATC (4) 9.1 0.0091 P8 GC+1d culture GATCCCAAAT (5) 4.6 0.0046 P8 GC+1d culture GCGGCGGCGG (24) 4.6 0.0046 P8 GC+1d culture CCCAGCTTAC (3) 2.3 0.0023 P8 GC+1d culture TCGCGGAAGG (4) 2.3 0.0023 P8 GC+1d culture AATCCTGGTA (3) 1.1 0.0011 P8 GC+1d culture GAGGCCAATG (6) 1.1 0.0011 P8 GC+1d culture GTTGTCCTTT (3) 1.1 0.0011 P8 GC+SHH+1d culture GAGTGGATTC (4) 169.8 0.1698 P8 GC+SHH+1d culture GCGGCGGCGG (24) 16.4 0.0164 P8 GC+SHH+1d culture GAGCGGGATC (4) 10.5 0.0105 P8 GC+SHH+1d culture GATCCCAAAT (5) 4.7 0.0047 P8 GC+SHH+1d culture GTTGTCCTTT (3) 3.5 0.0035 P8 GC+SHH+1d culture ATCCACTCCA (4) 1.2 0.0012 P8 GC+SHH+1d culture GGGTGGGGGA (14) 1.2 0.0012 P8 GC+SHH+1d culture TCGCGGAAGG (4) 1.2 0.0012 3T3 fibroblasts GAGTGGATTC (4) 35 0.035 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AGCCCAGCCA (5) 3.5 0.0035 3T3 fibroblasts GCCCTCTGGG (7) 3.5 0.0035 3T3 fibroblasts GCGGCGGCGG (24) 3.5 0.0035 E15 cortex GAGCGGGATC (4) 69.3 0.0693 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGCTTCTGAT (4) 4.9 0.0049 P1 cortex GAGCGGGATC (4) 18.2 0.0182 P1 cortex CAAATTTCTT (3) 4.5 0.0045 P1 cortex GGGTGGGGGA (14) 4.5 0.0045 Hypothalamus GAGTGGATTC (4) 29 0.029 Hypothalamus GAGCGGGATC (4) 10.9 0.0109 Hypothalamus GGGTGGGGGA (14) 9.1 0.0091 Hypothalamus GCGGCGGCGG (24) 7.2 0.0072 Hypothalamus TATATATTTG (5) 3.6 0.0036 Hypothalamus CGTGAGGCAG (3) 1.8 0.0018 Hypothalamus GAGGCCAATG (6) 1.8 0.0018 Hypothalamus GTTGTCCTTT (3) 1.8 0.0018 E12.5 retina GAGTGGATTC (4) 16.9 0.0169 E12.5 retina GCGGCGGCGG (24) 15 0.015 E12.5 retina GAGCGGGATC (4) 9.4 0.0094 E12.5 retina GATCCCAAAT (5) 7.5 0.0075 E12.5 retina TATATATTTG (5) 5.6 0.0056 E12.5 retina CTTTTGTAGG (3) 1.9 0.0019 E12.5 retina GCCCTCTGGG (7) 1.9 0.0019 E12.5 retina GGGTGGGGGA (14) 1.9 0.0019 E14.5 retina GAGTGGATTC (4) 25.5 0.0255 E14.5 retina GAGCGGGATC (4) 5.5 0.0055 E14.5 retina GCGGCGGCGG (24) 5.5 0.0055 E14.5 retina GATCCCAAAT (5) 3.6 0.0036 E14.5 retina TATATATTTG (5) 3.6 0.0036 E14.5 retina GAGGCCAATG (6) 1.8 0.0018 E16.5 retina GAGTGGATTC (4) 21.7 0.0217 E16.5 retina GCGGCGGCGG (24) 14.5 0.0145 E16.5 retina GAGCGGGATC (4) 7.2 0.0072 E16.5 retina TATATATTTG (5) 3.6 0.0036 E16.5 retina AGTCAATTAT (3) 1.8 0.0018 E16.5 retina ATCCACTCCA (4) 1.8 0.0018 E16.5 retina CTTTTGTAGG (3) 1.8 0.0018 E16.5 retina GATCCCAAAT (5) 1.8 0.0018 E18.5 retina GAGTGGATTC (4) 23.6 0.0236 E18.5 retina GCGGCGGCGG (24) 9.1 0.0091 E18.5 retina GAGCGGGATC (4) 7.3 0.0073 E18.5 retina TATATATTTG (5) 7.3 0.0073 E18.5 retina GATCCCAAAT (5) 5.5 0.0055 E18.5 retina GGGTGGGGGA (14) 1.8 0.0018 P0.5 retina GAGCGGGATC (4) 21.6 0.0216 P0.5 retina GAGTGGATTC (4) 13.7 0.0137 P0.5 retina GCGGCGGCGG (24) 7.9 0.0079 P0.5 retina GTTGTCCTTT (3) 5.9 0.0059 P0.5 retina ACTCCAAGTG (6) 3.9 0.0039 P0.5 retina GATCCCAAAT (5) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AATCCTGGTA (3) 2 0.002 P0.5 retina CAAATTTCTT (3) 2 0.002 P0.5 retina CCCAGCTTAC (3) 2 0.002 P0.5 retina TATATATTTG (5) 2 0.002 P2.5 retina GAGCGGGATC (4) 22.9 0.0229 P2.5 retina GAGTGGATTC (4) 21.1 0.0211 P2.5 retina GATCCCAAAT (5) 7 0.007 P2.5 retina GCGGCGGCGG (24) 7 0.007 P2.5 retina TATATATTTG (5) 5.3 0.0053 P2.5 retina ACTCCAAGTG (6) 1.8 0.0018 P2.5 retina CAAATTTCTT (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina GAGCGGGATC (4) 11.9 0.0119 P4.5 retina GAGTGGATTC (4) 11.9 0.0119 P4.5 retina GATCCCAAAT (5) 4 0.004 P4.5 retina GCGGCGGCGG (24) 4 0.004 P4.5 retina ACTCCAAGTG (6) 2 0.002 P4.5 retina ATCCACTCCA (4) 2 0.002 P4.5 retina GAGGCCAATG (6) 2 0.002 P4.5 retina GGGTGGGGGA (14) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina GTTGTCCTTT (3) 2 0.002 P4.5 retina TGCTTCTGAT (4) 2 0.002 P6.5 retina GAGTGGATTC (4) 18.3 0.0183 P6.5 retina GAGCGGGATC (4) 15 0.015 P6.5 retina GATCCCAAAT (5) 5 0.005 P6.5 retina GCGGCGGCGG (24) 5 0.005 P6.5 retina GGGTGGGGGA (14) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina ACTCCAAGTG (6) 1.7 0.0017 P10.5 crx- retina ACTCCAAGTG (6) 31.6 0.0316 P10.5 crx- retina GAGCGGGATC (4) 20.4 0.0204 P10.5 crx- retina GAGTGGATTC (4) 18.6 0.0186 P10.5 crx- retina GATCCCAAAT (5) 7.4 0.0074 P10.5 crx- retina GGGTGGGGGA (14) 5.6 0.0056 P10.5 crx- retina AGCCCAGCCA (5) 1.9 0.0019 P10.5 crx- retina AGTCAATTAT (3) 1.9 0.0019 P10.5 crx- retina GCCCTCTGGG (7) 1.9 0.0019 P10.5 crx- retina GCGGCGGCGG (24) 1.9 0.0019 P10.5 crx+ retina GAGCGGGATC (4) 26.9 0.0269 P10.5 crx+ retina GAGTGGATTC (4) 23.1 0.0231 P10.5 crx+ retina GCGGCGGCGG (24) 15.4 0.0154 P10.5 crx+ retina ACTCCAAGTG (6) 11.5 0.0115 P10.5 crx+ retina GATCCCAAAT (5) 5.8 0.0058 P10.5 crx+ retina AGCCCAGCCA (5) 3.8 0.0038 P10.5 crx+ retina CGTGAGGCAG (3) 1.9 0.0019 P10.5 crx+ retina GGGTGGGGGA (14) 1.9 0.0019 Adult retinal GAGCGGGATC (4) 18.5 0.0185 Adult retinal GCGGCGGCGG (24) 16.7 0.0167 Adult retinal ACTCCAAGTG (6) 11.1 0.0111 Adult retinal GAGTGGATTC (4) 7.4 0.0074 Adult retinal GGGTGGGGGA (14) 3.7 0.0037 Adult retinal CGTGAGGCAG (3) 1.9 0.0019 Adult retinal GATCCCAAAT (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TCGCGGAAGG (4) 1.9 0.0019 Adult retinal TGCTTCTGAT (4) 1.9 0.0019 ONL GCGGCGGCGG (24) 9.6 0.0096 ONL GAGTGGATTC (4) 7.7 0.0077 ONL ACTCCAAGTG (6) 5.7 0.0057 ONL GAGCGGGATC (4) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GATCCCAAAT (5) 3.8 0.0038 ONL AGCCCAGCCA (5) 1.9 0.0019 ONL CAAATTTCTT (3) 1.9 0.0019