Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4618	1110003E12Rik	RIKEN cDNA 1110003E12 gene	15		68485
Mm.4618	Sp1	trans-acting transcription factor 1	15		20683
Gene Ontology	DNA binding | nucleic acid binding | nucleus | positive regulation of transcription, DNA-dependent | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex | transcriptional activator activity | zinc ion binding
Human Homolog	SP1[Sp1 transcription factor]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 87 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GGCAGGTTAT (6) 3.3 0.0033 P8 Cb GC AAAGTGCCCA (4) 1.6 0.0016 P8 Cb GC AAGTGCCACT (3) 1.6 0.0016 P8 Cb GC TGAGAGAGAA (4) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GGGGGGGGGG (112) 6.9 0.0069 Cb medulloblastoma AAGTGCCACT (3) 2.3 0.0023 Cb medulloblastoma AATTAATTTA (4) 2.3 0.0023 Cb medulloblastoma AGAAGGAGAA (4) 2.3 0.0023 Cb medulloblastoma GGCAGGTTAT (6) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture AAGTGCCACT (3) 2.3 0.0023 P8 GC+1d culture GGGGGGGGGG (112) 2.3 0.0023 P8 GC+1d culture AAAGTGCCCA (4) 1.1 0.0011 P8 GC+1d culture GGCAGGTTAT (6) 1.1 0.0011 P8 GC+1d culture TGAGAGAGAA (4) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GGGGGGGGGG (112) 7 0.007 P8 GC+SHH+1d culture AAGTGCCACT (3) 5.9 0.0059 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts AAGTGCCACT (3) 7 0.007 3T3 fibroblasts AAAACAGTGA (2) 3.5 0.0035 3T3 fibroblasts ACACATCAAG (2) 3.5 0.0035 3T3 fibroblasts GGGGGGGGGG (112) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex AAAGTGCCCA (4) 4.9 0.0049 E15 cortex ACACATCAAG (2) 4.9 0.0049 E15 cortex AGAAGGAGAA (4) 4.9 0.0049 E15 cortex GCTCCCTGTT (3) 4.9 0.0049 E15 cortex GGGGGGGGGG (112) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex AATTAATTTA (4) 9.1 0.0091 P1 cortex ACACATCAAG (2) 9.1 0.0091 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus AATTAATTTA (4) 7.2 0.0072 Hypothalamus GGGGGGGGGG (112) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina AAGTGCCACT (3) 1.9 0.0019 E12.5 retina GCTCCCTGTT (3) 1.9 0.0019 E12.5 retina GGCAGGTTAT (6) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GGCAGGTTAT (6) 5.5 0.0055 E14.5 retina AATTAATTTA (4) 3.6 0.0036 E14.5 retina AAAACAGTGA (2) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GGCAGGTTAT (6) 7.2 0.0072 E16.5 retina AAGTGCCACT (3) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina AAAGTGCCCA (4) 1.8 0.0018 E18.5 retina AAGTGCCACT (3) 1.8 0.0018 E18.5 retina CAGATGAGAA (2) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina AAAGTGCCCA (4) 7.9 0.0079 P0.5 retina AGAAGGAGAA (4) 3.9 0.0039 P0.5 retina GGCAGGTTAT (6) 3.9 0.0039 P0.5 retina AAAACAGTGA (2) 2 0.002 P0.5 retina AATTAATTTA (4) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GGGGGGGGGG (112) 7 0.007 P2.5 retina GGCAGGTTAT (6) 3.5 0.0035 P2.5 retina AAGTGCCACT (3) 1.8 0.0018 P2.5 retina AATTAATTTA (4) 1.8 0.0018 P2.5 retina CAGATGAGAA (2) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GGGGGGGGGG (112) 9.9 0.0099 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GGCAGGTTAT (6) 3.3 0.0033 P6.5 retina GGGGGGGGGG (112) 3.3 0.0033 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina AATTAATTTA (4) 3.7 0.0037 P10.5 crx- retina GGCAGGTTAT (6) 3.7 0.0037 P10.5 crx- retina TGAGAGAGAA (4) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GGGGGGGGGG (112) 9.6 0.0096 P10.5 crx+ retina GGCAGGTTAT (6) 3.8 0.0038 P10.5 crx+ retina AAAGTGCCCA (4) 1.9 0.0019 P10.5 crx+ retina AAGTGCCACT (3) 1.9 0.0019 P10.5 crx+ retina AATTAATTTA (4) 1.9 0.0019 P10.5 crx+ retina CAGATGAGAA (2) 1.9 0.0019 P10.5 crx+ retina GCTCCCTGTT (3) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GGGGGGGGGG (112) 3.7 0.0037 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL AATTAATTTA (4) 5.7 0.0057 ONL AAGTGCCACT (3) 3.8 0.0038 ONL GGGGGGGGGG (112) 1.9 0.0019