Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4636	Neurod1	neurogenic differentiation 1	2	2 C3 (2 46.0 cM)	18012
Gene Ontology	cell differentiation | development | DNA binding | eye morphogenesis | neurogenesis | nucleus | nucleus | regulation of transcription, DNA-dependent | transcriptional activator activity
Human Homolog	NEUROD1[neurogenic differentiation 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 4 In Situ Hybridization Images

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SAGE Tags

Total 80 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGTTGCAAT 184.3 0.1843 P8 Cb GC CAGCTTCATC (5) 17.9 0.0179 P8 Cb GC GAATTCAAAG (9) 8.2 0.0082 P8 Cb GC AGTGCCCAGC (3) 3.3 0.0033 Cb medulloblastoma CAGTTGCAAT 104.1 0.1041 Cb medulloblastoma CAGCTTCATC (5) 4.6 0.0046 Cb medulloblastoma GAATTCAAAG (9) 4.6 0.0046 Cb medulloblastoma GACAGCTCCC (2) 2.3 0.0023 Cb medulloblastoma GGAAAGGTCA (2) 2.3 0.0023 P8 GC+1d culture CAGTTGCAAT 324.2 0.3242 P8 GC+1d culture CAGCTTCATC (5) 50.2 0.0502 P8 GC+1d culture GAATTCAAAG (9) 9.1 0.0091 P8 GC+1d culture CCCCCGCATC (2) 8 0.008 P8 GC+1d culture GGAAAGGTCA (2) 6.8 0.0068 P8 GC+1d culture AGTGCCCAGC (3) 5.7 0.0057 P8 GC+1d culture TAATAAATCT 3.4 0.0034 P8 GC+1d culture AATGCAGAGG (2) 1.1 0.0011 P8 GC+SHH+1d culture CAGTTGCAAT 320.8 0.3208 P8 GC+SHH+1d culture CAGCTTCATC (5) 23.4 0.0234 P8 GC+SHH+1d culture GAATTCAAAG (9) 9.4 0.0094 P8 GC+SHH+1d culture GGAAAGGTCA (2) 4.7 0.0047 P8 GC+SHH+1d culture AGTGCCCAGC (3) 2.3 0.0023 P8 GC+SHH+1d culture CCCCCGCATC (2) 1.2 0.0012 E15 cortex AATGCAGAGG (2) 4.9 0.0049 E15 cortex GAATTCAAAG (9) 4.9 0.0049 P1 cortex GAATTCAAAG (9) 4.5 0.0045 Hypothalamus CAGTTGCAAT 1.8 0.0018 Hypothalamus GGAAAGGTCA (2) 1.8 0.0018 E12.5 retina CAGTTGCAAT 31.9 0.0319 E12.5 retina GAATTCAAAG (9) 9.4 0.0094 E12.5 retina CAGCTTCATC (5) 3.8 0.0038 E14.5 retina CAGTTGCAAT 23.7 0.0237 E14.5 retina CAGCTTCATC (5) 1.8 0.0018 E14.5 retina CCCCCGCATC (2) 1.8 0.0018 E14.5 retina GAATTCAAAG (9) 1.8 0.0018 E16.5 retina CAGTTGCAAT 50.7 0.0507 E16.5 retina GAATTCAAAG (9) 5.4 0.0054 E16.5 retina CAGCTTCATC (5) 3.6 0.0036 E16.5 retina AATGCAGAGG (2) 1.8 0.0018 E16.5 retina TAATAAATCT 1.8 0.0018 E18.5 retina CAGTTGCAAT 70.9 0.0709 E18.5 retina CAGCTTCATC (5) 10.9 0.0109 E18.5 retina GGAAAGGTCA (2) 1.8 0.0018 P0.5 retina CAGTTGCAAT 51 0.051 P0.5 retina CAGCTTCATC (5) 3.9 0.0039 P0.5 retina AGTGCCCAGC (3) 2 0.002 P0.5 retina GAATTCAAAG (9) 2 0.002 P2.5 retina CAGTTGCAAT 198.9 0.1989 P2.5 retina CAGCTTCATC (5) 15.8 0.0158 P2.5 retina GAATTCAAAG (9) 8.8 0.0088 P2.5 retina AGTGCCCAGC (3) 1.8 0.0018 P4.5 retina CAGTTGCAAT 342.8 0.3428 P4.5 retina CAGCTTCATC (5) 17.8 0.0178 P4.5 retina GAATTCAAAG (9) 5.9 0.0059 P4.5 retina GACAGCTCCC (2) 2 0.002 P6.5 retina CAGTTGCAAT 218.4 0.2184 P6.5 retina CAGCTTCATC (5) 25 0.025 P6.5 retina GAATTCAAAG (9) 5 0.005 P6.5 retina AATGCAGAGG (2) 1.7 0.0017 P6.5 retina CCCCCGCATC (2) 1.7 0.0017 P6.5 retina GACAGCTCCC (2) 1.7 0.0017 P6.5 retina GGAAAGGTCA (2) 1.7 0.0017 P10.5 crx- retina CAGTTGCAAT 66.9 0.0669 P10.5 crx- retina CAGCTTCATC (5) 20.4 0.0204 P10.5 crx- retina GAATTCAAAG (9) 3.7 0.0037 P10.5 crx- retina AGTGCCCAGC (3) 1.9 0.0019 P10.5 crx- retina GGAAAGGTCA (2) 1.9 0.0019 P10.5 crx+ retina CAGTTGCAAT 138.4 0.1384 P10.5 crx+ retina CAGCTTCATC (5) 7.7 0.0077 P10.5 crx+ retina AATGCAGAGG (2) 1.9 0.0019 Adult retinal CAGTTGCAAT 68.5 0.0685 Adult retinal CAGCTTCATC (5) 14.8 0.0148 Adult retinal GAATTCAAAG (9) 5.6 0.0056 Adult retinal AGTGCCCAGC (3) 3.7 0.0037 Adult retinal CCCCCGCATC (2) 1.9 0.0019 Adult retinal GGAAAGGTCA (2) 1.9 0.0019 ONL CAGTTGCAAT 76.6 0.0766 ONL CAGCTTCATC (5) 5.7 0.0057 ONL GAATTCAAAG (9) 5.7 0.0057 ONL AGTGCCCAGC (3) 1.9 0.0019