Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.46705
Sdccag1
serologically defined colon cancer antigen 1
12
66244
Gene Ontology
nucleus
Human Homolog
SDCCAG1[serologically defined colon cancer antigen 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 85 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
AAATGAAACC
9.8
0.0098
P8 Cb GC
GTGGCGCACA (
11
)
8.2
0.0082
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
AAATGAAACC
20.8
0.0208
Cb medulloblastoma
ATGTAACGAC
(
3
)
9.2
0.0092
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
AAATGAAACC
13.7
0.0137
P8 GC+1d culture
GTGGCGCACA (
11
)
3.4
0.0034
P8 GC+1d culture
ATGTAACGAC
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
ATGTAACGAC
(
3
)
4.7
0.0047
P8 GC+SHH+1d culture
AAATGAAACC
3.5
0.0035
P8 GC+SHH+1d culture
GTGGCGCACA (
11
)
3.5
0.0035
P8 GC+SHH+1d culture
GCAGAAGAAA (
3
)
1.2
0.0012
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
GTGGCGCACA (
11
)
28
0.028
3T3 fibroblasts
ATGTAACGAC
(
3
)
14
0.014
3T3 fibroblasts
TGAGTCAGGG
(
3
)
3.5
0.0035
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
GTGGCGCACA (
11
)
44.5
0.0445
E15 cortex
AAATGAAACC
4.9
0.0049
E15 cortex
TGAAGAGGAA
(
5
)
4.9
0.0049
E15 cortex
TGAGTCAGGG
(
3
)
4.9
0.0049
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
AAATGAAACC
9.1
0.0091
P1 cortex
ATGTAACGAC
(
3
)
4.5
0.0045
P1 cortex
GTGGCGCACA (
11
)
4.5
0.0045
P1 cortex
TGAGTCAGGG
(
3
)
4.5
0.0045
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
AAATGAAACC
7.2
0.0072
Hypothalamus
ATGTAACGAC
(
3
)
3.6
0.0036
Hypothalamus
GTGGCGCACA (
11
)
3.6
0.0036
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
AAATGAAACC
7.5
0.0075
E12.5 retina
ATGTAACGAC
(
3
)
5.6
0.0056
E12.5 retina
GTGGCGCACA (
11
)
3.8
0.0038
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
AAATGAAACC
20
0.02
E14.5 retina
GTGGCGCACA (
11
)
10.9
0.0109
E14.5 retina
GCAGAAGAAA (
3
)
3.6
0.0036
E14.5 retina
ATGTAACGAC
(
3
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
AAATGAAACC
12.7
0.0127
E16.5 retina
GTGGCGCACA (
11
)
9.1
0.0091
E16.5 retina
TGAAGAGGAA
(
5
)
3.6
0.0036
E16.5 retina
ATGTAACGAC
(
3
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
AAATGAAACC
9.1
0.0091
E18.5 retina
ATGTAACGAC
(
3
)
5.5
0.0055
E18.5 retina
GTGGCGCACA (
11
)
5.5
0.0055
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
ATGTAACGAC
(
3
)
5.9
0.0059
P0.5 retina
GTGGCGCACA (
11
)
5.9
0.0059
P0.5 retina
AAATGAAACC
2
0.002
P0.5 retina
TGAAGAGGAA
(
5
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
AAATGAAACC
22.9
0.0229
P2.5 retina
GTGGCGCACA (
11
)
7
0.007
P2.5 retina
ATGTAACGAC
(
3
)
3.5
0.0035
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
AAATGAAACC
9.9
0.0099
P4.5 retina
GTGGCGCACA (
11
)
7.9
0.0079
P4.5 retina
ATGTAACGAC
(
3
)
2
0.002
P4.5 retina
TGAGTCAGGG
(
3
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
AAATGAAACC
20
0.02
P6.5 retina
GTGGCGCACA (
11
)
11.7
0.0117
P6.5 retina
ATGTAACGAC
(
3
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
AAATGAAACC
13
0.013
P10.5 crx- retina
GTGGCGCACA (
11
)
5.6
0.0056
P10.5 crx- retina
TGAAGAGGAA
(
5
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
AAATGAAACC
15.4
0.0154
P10.5 crx+ retina
GTGGCGCACA (
11
)
11.5
0.0115
P10.5 crx+ retina
ATGTAACGAC
(
3
)
7.7
0.0077
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
GTGGCGCACA (
11
)
22.2
0.0222
Adult retinal
AAATGAAACC
7.4
0.0074
Adult retinal
ATGTAACGAC
(
3
)
7.4
0.0074
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
GTGGCGCACA (
11
)
13.4
0.0134
ONL
AAATGAAACC
3.8
0.0038
ONL
ATGTAACGAC
(
3
)
1.9
0.0019
