Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.486	Lamp2	lysosomal membrane glycoprotein 2	X	X 13.0 cM	16784
Gene Ontology	ATP binding | integral to membrane | lysosome | lysosome | membrane | tRNA aminoacylation for protein translation | tRNA ligase activity
Human Homolog	LAMP2[lysosomal-associated membrane protein 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAATAAAA (14) 8.2 0.0082 P8 Cb GC TTTTCTCTTC (7) 4.9 0.0049 P8 Cb GC GACCAGTTTC 3.3 0.0033 P8 Cb GC GGCCAGTTTA (2) 1.6 0.0016 P8 Cb GC TTTTTGAATA (3) 1.6 0.0016 Cb medulloblastoma TAAAATAAAA (14) 18.5 0.0185 Cb medulloblastoma GACCAGTTTC 4.6 0.0046 Cb medulloblastoma CACAAAAGAA (4) 2.3 0.0023 Cb medulloblastoma GGGCTGCAGC (5) 2.3 0.0023 Cb medulloblastoma TTTTCTCTTC (7) 2.3 0.0023 Cb medulloblastoma TTTTCTTTTC (5) 2.3 0.0023 P8 GC+1d culture TCATCTTTAA (3) 14.8 0.0148 P8 GC+1d culture TAAAATAAAA (14) 12.6 0.0126 P8 GC+1d culture TTTTCTCTTC (7) 6.8 0.0068 P8 GC+1d culture TTTTTGAATA (3) 3.4 0.0034 P8 GC+1d culture ACAAATACAT (2) 2.3 0.0023 P8 GC+1d culture GACCAGTTTC 1.1 0.0011 P8 GC+1d culture GGCCAGTTTA (2) 1.1 0.0011 P8 GC+1d culture TCTGTGACTG (3) 1.1 0.0011 P8 GC+SHH+1d culture TAAAATAAAA (14) 8.2 0.0082 P8 GC+SHH+1d culture TCATCTTTAA (3) 7 0.007 P8 GC+SHH+1d culture GACCAGTTTC 3.5 0.0035 P8 GC+SHH+1d culture GGCCAGTTTA (2) 3.5 0.0035 P8 GC+SHH+1d culture TTTTCTCTTC (7) 3.5 0.0035 P8 GC+SHH+1d culture ACAAATACAT (2) 2.3 0.0023 P8 GC+SHH+1d culture TTTTCTTTTC (5) 2.3 0.0023 P8 GC+SHH+1d culture GGGCTGCAGC (5) 1.2 0.0012 P8 GC+SHH+1d culture TCTGTGACTG (3) 1.2 0.0012 3T3 fibroblasts TCATCTTTAA (3) 7 0.007 3T3 fibroblasts ACCATTATAA 3.5 0.0035 3T3 fibroblasts TTTTTGAATA (3) 3.5 0.0035 E15 cortex GGGGGAGTGA 19.8 0.0198 P1 cortex TAAAATAAAA (14) 13.6 0.0136 P1 cortex CACAAAAGAA (4) 4.5 0.0045 P1 cortex GGGGGAGTGA 4.5 0.0045 P1 cortex TCATCTTTAA (3) 4.5 0.0045 Hypothalamus TAAAATAAAA (14) 12.7 0.0127 Hypothalamus ACCATTATAA 1.8 0.0018 Hypothalamus CACAAAAGAA (4) 1.8 0.0018 Hypothalamus GGGCTGCAGC (5) 1.8 0.0018 Hypothalamus TCATCTTTAA (3) 1.8 0.0018 Hypothalamus TTTTCTCTTC (7) 1.8 0.0018 E12.5 retina TAAAATAAAA (14) 11.3 0.0113 E12.5 retina ACCATTATAA 1.9 0.0019 E12.5 retina TTTTCTCTTC (7) 1.9 0.0019 E12.5 retina TTTTTGAATA (3) 1.9 0.0019 E14.5 retina GACCAGTTTC 3.6 0.0036 E14.5 retina TAAAATAAAA (14) 3.6 0.0036 E14.5 retina ACCATTATAA 1.8 0.0018 E14.5 retina TTTTCTCTTC (7) 1.8 0.0018 E16.5 retina TAAAATAAAA (14) 5.4 0.0054 E16.5 retina TTTTCTCTTC (7) 3.6 0.0036 E16.5 retina ACCATTATAA 1.8 0.0018 E16.5 retina TCTGTGACTG (3) 1.8 0.0018 E16.5 retina TTTTTGAATA (3) 1.8 0.0018 E18.5 retina TAAAATAAAA (14) 14.6 0.0146 E18.5 retina CAGTTCCCTG 1.8 0.0018 E18.5 retina GACCAGTTTC 1.8 0.0018 P0.5 retina CAGTTCCCTG 2 0.002 P0.5 retina GGGCTGAAGC (3) 2 0.002 P0.5 retina GGGGGAGTGA 2 0.002 P0.5 retina TAAAATAAAA (14) 2 0.002 P0.5 retina TCATCTTTAA (3) 2 0.002 P0.5 retina TTTTCTCTTC (7) 2 0.002 P2.5 retina TAAAATAAAA (14) 8.8 0.0088 P2.5 retina GACCAGTTTC 3.5 0.0035 P2.5 retina TCATCTTTAA (3) 3.5 0.0035 P2.5 retina TTTTCTTTTC (5) 3.5 0.0035 P2.5 retina GGGCTGAAGC (3) 1.8 0.0018 P2.5 retina TCTGTGACTG (3) 1.8 0.0018 P2.5 retina TTTTCTCTTC (7) 1.8 0.0018 P4.5 retina TAAAATAAAA (14) 27.7 0.0277 P4.5 retina TCATCTTTAA (3) 7.9 0.0079 P4.5 retina TTTTTGAATA (3) 4 0.004 P4.5 retina ACCATTATAA 2 0.002 P4.5 retina GGGCTGCAGC (5) 2 0.002 P6.5 retina TAAAATAAAA (14) 11.7 0.0117 P6.5 retina CAGTTCCCTG 1.7 0.0017 P6.5 retina TCATCTTTAA (3) 1.7 0.0017 P6.5 retina TTTTCTCTTC (7) 1.7 0.0017 P6.5 retina TTTTCTTTTC (5) 1.7 0.0017 P10.5 crx- retina ACCATTATAA 5.6 0.0056 P10.5 crx- retina TAAAATAAAA (14) 5.6 0.0056 P10.5 crx- retina TCTGTGACTG (3) 3.7 0.0037 P10.5 crx- retina TTTTCTTTTC (5) 1.9 0.0019 P10.5 crx+ retina GACCAGTTTC 1.9 0.0019 P10.5 crx+ retina GGGCTGAAGC (3) 1.9 0.0019 P10.5 crx+ retina GGGCTGCAGC (5) 1.9 0.0019 P10.5 crx+ retina TAAAATAAAA (14) 1.9 0.0019 P10.5 crx+ retina TCATCTTTAA (3) 1.9 0.0019 P10.5 crx+ retina TTTTTGAATA (3) 1.9 0.0019 Adult retinal CACAAAAGAA (4) 1.9 0.0019 Adult retinal GGGCTGAAGC (3) 1.9 0.0019 Adult retinal TCATCTTTAA (3) 1.9 0.0019 Adult retinal TTTTCTCTTC (7) 1.9 0.0019 Adult retinal TTTTCTTTTC (5) 1.9 0.0019 ONL TAAAATAAAA (14) 7.7 0.0077 ONL CACAAAAGAA (4) 1.9 0.0019 ONL GACCAGTTTC 1.9 0.0019 ONL GGCCAGTTTA (2) 1.9 0.0019 ONL TCATCTTTAA (3) 1.9 0.0019 ONL TTTTCTCTTC (7) 1.9 0.0019