Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4911	C230079E05Rik	RIKEN cDNA C230079E05 gene	15		320889
Mm.4911	Cntn1	contactin 1	15	15 55.1 cM	12805
Gene Ontology	cell adhesion | DNA binding | DNA methylation | extracellular space | N-methyltransferase activity | plasma membrane | protein binding
Human Homolog	CNTN1[contactin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 68 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGTCAGCAA (4) 13.1 0.0131 P8 Cb GC CCCTTCCCTT (9) 4.9 0.0049 P8 Cb GC CTTTAAGATG (3) 1.6 0.0016 Cb medulloblastoma ATATTTTGAG (4) 9.2 0.0092 Cb medulloblastoma CCTGCCTTTT (4) 2.3 0.0023 Cb medulloblastoma CTGCTGGTAC (2) 2.3 0.0023 Cb medulloblastoma CTTTAAGATG (3) 2.3 0.0023 Cb medulloblastoma TGATACATTG (2) 2.3 0.0023 P8 GC+1d culture CCCTTCCCTT (9) 14.8 0.0148 P8 GC+1d culture CTTTAAGATG (3) 6.8 0.0068 P8 GC+1d culture GAGTCAGCAA (4) 5.7 0.0057 P8 GC+1d culture ATATTTTGAG (4) 1.1 0.0011 P8 GC+SHH+1d culture CCCTTCCCTT (9) 17.6 0.0176 P8 GC+SHH+1d culture GAGTCAGCAA (4) 7 0.007 P8 GC+SHH+1d culture CTTTAAGATG (3) 2.3 0.0023 P8 GC+SHH+1d culture ATATTTTGAG (4) 1.2 0.0012 P8 GC+SHH+1d culture CCTGCCTTTT (4) 1.2 0.0012 3T3 fibroblasts GAGTCAGCAA (4) 17.5 0.0175 3T3 fibroblasts CCCTTCCCTT (9) 3.5 0.0035 E15 cortex CCCTTCCCTT (9) 24.7 0.0247 E15 cortex GAGTCAGCAA (4) 9.9 0.0099 P1 cortex CCCTTCCCTT (9) 18.2 0.0182 P1 cortex CTTTAAGATG (3) 4.5 0.0045 Hypothalamus CCCTTCCCTT (9) 5.4 0.0054 Hypothalamus ATATTTTGAG (4) 1.8 0.0018 Hypothalamus CTGCTGGTAC (2) 1.8 0.0018 Hypothalamus CTTTAAGATG (3) 1.8 0.0018 Hypothalamus TGATACATTG (2) 1.8 0.0018 E12.5 retina CCCTTCCCTT (9) 16.9 0.0169 E12.5 retina GAGTCAGCAA (4) 7.5 0.0075 E14.5 retina CCCTTCCCTT (9) 10.9 0.0109 E14.5 retina ATATTTTGAG (4) 1.8 0.0018 E16.5 retina CCCTTCCCTT (9) 41.7 0.0417 E16.5 retina GAGTCAGCAA (4) 3.6 0.0036 E16.5 retina ATATTTTGAG (4) 1.8 0.0018 E18.5 retina GAGTCAGCAA (4) 16.4 0.0164 E18.5 retina CCCTTCCCTT (9) 9.1 0.0091 E18.5 retina ATATTTTGAG (4) 1.8 0.0018 E18.5 retina TGATAGATTG (2) 1.8 0.0018 P0.5 retina CCCTTCCCTT (9) 37.3 0.0373 P0.5 retina GAGTCAGCAA (4) 5.9 0.0059 P2.5 retina CCCTTCCCTT (9) 17.6 0.0176 P2.5 retina GAGTCAGCAA (4) 7 0.007 P2.5 retina ATATTTTGAG (4) 1.8 0.0018 P2.5 retina CCTGCCTTTT (4) 1.8 0.0018 P2.5 retina CTTTAAGATG (3) 1.8 0.0018 P4.5 retina CCCTTCCCTT (9) 5.9 0.0059 P4.5 retina ATATTTTGAG (4) 2 0.002 P4.5 retina GAGTCAGCAA (4) 2 0.002 P6.5 retina CCCTTCCCTT (9) 15 0.015 P6.5 retina CTTTAAGATG (3) 5 0.005 P6.5 retina ATATTTTGAG (4) 1.7 0.0017 P6.5 retina TGATACATTG (2) 1.7 0.0017 P10.5 crx- retina ATATTTTGAG (4) 5.6 0.0056 P10.5 crx- retina CCCTTCCCTT (9) 3.7 0.0037 P10.5 crx- retina CTTTAAGATG (3) 3.7 0.0037 P10.5 crx- retina CCTGCCTTTT (4) 1.9 0.0019 P10.5 crx- retina TGATAGATTG (2) 1.9 0.0019 P10.5 crx+ retina ATATTTTGAG (4) 3.8 0.0038 P10.5 crx+ retina CCCTTCCCTT (9) 3.8 0.0038 P10.5 crx+ retina CTTTAAGATG (3) 3.8 0.0038 P10.5 crx+ retina GAGTCAGCAA (4) 1.9 0.0019 Adult retinal CCCTTCCCTT (9) 5.6 0.0056 Adult retinal CTTTAAGATG (3) 5.6 0.0056 Adult retinal CTGCTGGTAC (2) 3.7 0.0037 Adult retinal TGATAGATTG (2) 1.9 0.0019 ONL CTTTAAGATG (3) 3.8 0.0038 ONL GAGTCAGCAA (4) 1.9 0.0019