Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.5088	C030026E19Rik	RIKEN cDNA C030026E19 gene	9		77416
Mm.5088	Atm	ataxia telangiectasia mutated homolog (human)	9	9 30.0 cM	11920
Gene Ontology	cell cycle | DNA binding | DNA damage response, signal transduction resulting in cell cycle arrest | DNA damage response, signal transduction resulting in induction of apoptosis | DNA repair | intracellular | kinase activity | negative regulation of cell cycle | nucleus | phosphotransferase activity, alcohol group as acceptor | protein serine/threonine kinase activity | regulation of transcription, DNA-dependent | response to DNA damage stimulus | transcription factor activity | transferase activity
Human Homolog	ATM[ataxia telangiectasia mutated (includes complementation groups A, C and D)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 40 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTTTTGTAAA (5) 3.3 0.0033 P8 Cb GC GGCTCCTGGT (7) 1.6 0.0016 Cb medulloblastoma GTTTTGTAAA (5) 6.9 0.0069 P8 GC+1d culture GTTTTGTAAA (5) 8 0.008 P8 GC+1d culture AACTAGGAAG (3) 1.1 0.0011 P8 GC+1d culture CTAATGGGCA (2) 1.1 0.0011 P8 GC+1d culture TCTGTCTGTC (15) 1.1 0.0011 P8 GC+1d culture TGCCTAACCT (3) 1.1 0.0011 P8 GC+SHH+1d culture GTTTTGTAAA (5) 5.9 0.0059 P8 GC+SHH+1d culture AACTAGGAAG (3) 2.3 0.0023 3T3 fibroblasts AACTAGGAAG (3) 3.5 0.0035 3T3 fibroblasts GTTTTGTAAA (5) 3.5 0.0035 P1 cortex GGCTCCTGGT (7) 4.5 0.0045 Hypothalamus GTTTTGTAAA (5) 10.9 0.0109 Hypothalamus CTAATGGGCA (2) 3.6 0.0036 E12.5 retina GTTTTGTAAA (5) 3.8 0.0038 E12.5 retina TGCCTAACCT (3) 3.8 0.0038 E14.5 retina GTTTTGTAAA (5) 14.6 0.0146 E16.5 retina GTTTTGTAAA (5) 12.7 0.0127 E18.5 retina GTTTTGTAAA (5) 5.5 0.0055 E18.5 retina GAAAAATTCT (5) 1.8 0.0018 E18.5 retina GGCTCCTGGT (7) 1.8 0.0018 P0.5 retina GTTTTGTAAA (5) 3.9 0.0039 P0.5 retina TCTGTCTGTC (15) 2 0.002 P2.5 retina GTTTTGTAAA (5) 3.5 0.0035 P2.5 retina GGCTCCTGGT (7) 1.8 0.0018 P2.5 retina TCTGTCTGTC (15) 1.8 0.0018 P4.5 retina GTTTTGTAAA (5) 13.9 0.0139 P4.5 retina AAATGGAAAA (8) 2 0.002 P4.5 retina GGCTCCTGGT (7) 2 0.002 P6.5 retina GTTTTGTAAA (5) 3.3 0.0033 P6.5 retina GGCTCCTGGT (7) 1.7 0.0017 P6.5 retina TCTGTCTGTC (15) 1.7 0.0017 P10.5 crx- retina GTTTTGTAAA (5) 9.3 0.0093 P10.5 crx+ retina TCTGTCTGTC (15) 1.9 0.0019 Adult retinal TCTGTCTGTC (15) 1.9 0.0019 Adult retinal TGCCTAACCT (3) 1.9 0.0019 ONL AAATGGAAAA (8) 3.8 0.0038 ONL GAAAAATTCT (5) 3.8 0.0038 ONL GTTTTGTAAA (5) 1.9 0.0019